Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3111 ATGGCGTCGTCCCAAGTTGAAATCGCTCTAACTTCACCCTTCGGCTGCGTTCTGAGGCGATACAACCGTCGAGAAACATGCAGGGAAAGTAATTCCCGAGCTTCCTCACATGGCGGTTTCCAAAACGACGATCGGAGTTTCGTGAGAGAACATCGTAATGCCACCATCTGCAACTCTGCAACACCAAAAGACGAGAAGAAGACCAGCAACAACGTCACACATAATATCCAAATCAATCTCGACGATGCCAAGAAGAAGAAGAATGATAACAATAACTGCAACCTCGGAAATATGGGATTCACGAAGAAGGAAAAAGAAGAAGAATCCTCGTCCTCCTCGAGGCAGTCCCAGATTCTGGATCGATGGGCTGCGAGAAAGGCCCGAGAAATGGTGTCCACCATCGAGACCGAGGCTGAGCTTCTGGAGACTCTGGGTTCTTCTCCTTCTTCCTTATCATCTTCTTCTTCTTCGAGGCCTCCAAGTAGTTCTACATCCTCCGAAATCTCAAACCGTGGGGCTTCCTCTCTCGTTCAAATATGGGAGAAGAGGCTCAACAACATTAACCAGTCATCCATTGACACCAAATCTATCGGAAGTCTCAGTGCAACGAGCTGCAACGGATCAAGTTCATTACTGTTAGGAGAATACAGCGACGAATCATCGTCGTGTTCGGAGTTTGTATCAGAGAGAGCCTCAAGTGTGAGTGTGACAAATGAACCAACGTGTTCAACCCCAAGGGTGGCTGATATAATCAAGAGACTGACATTATCGATTGGTGAGGAGAATAACTGCGAGCAGGAGAAGGAGCAGTGTAATTCTATGACGACGGGGTCGTCGTCGTCGTTGTCGAAAGTGCGTGTGAGAGCTCCGACGACGGAACAAGCAGAGCACAGAACGGTGGTTCAGGTGACGAATTCGCCTCGCCTCAGAGGGCGTCAAGCATTCACAGATTTGCTTACACAGATAGAACGTGACAGACATGGTGAACTCAATAATCTGGCTCAGCTTGCACCCGTCTCCAACTTTTCTCAAAGAAGTCGTAGCCGTATTCAGTCACACCTTCGGCTAAAACTATTGCAACGCCGCCAAACATTAAAGACATCTGAAGTGAATAAACAGCCACAAGGATCCACGATCATGCACCTCAGGGAAAGATTTAACGTAAAGGTGGAACATGAAAGTATAGGTCAGATAGAAGTAGCTAGTCCAAGAACTCCACGCCCTAGTCAGTTCAACAAAGACCCTCACACTAATAGCAATCAGAGTTCAAGGAGTGAGCATCATTCTGGTTCAGTTGGGTTCGAAGGGGTGACCAACTTGAACGATGCCTGCCAAACTGTTCATAGTGTTAATGGCGATAATCACAATGCTACATGTGCTCAAAACCAAAAACCAGTGTATCAAACTGAAGAAGAAGAAGCTCGTCCAAGTTCAGAAACATGCATGGAGGCTCACAATGCTGTGCCACAAGAAACTGCTGAGACAAGTGCTTCCAATATGGTTGATTCAAATGCAAATCATGAGATAGAAAACGAGGCTGAGGCTGAGGCAAAGGCAAAGCAGTGTAATAGTGCAGAACCTGAAAGCTGCTTTGTGGATGAAGCAACGAATGAAGAGGAATGTGGGAGTGAGGAGCAGCATGGAGAAGGGAATGATTATGAAAATGACGATGGGTTAGAGCAACATTATGATGATGAAGCTTATTATGATTGGATCGGTCCTATTTCTCGCCCCAGAAGCTACTGGGAAGATCGCAGACAAGCGTGGTATAGGGAGATGCTTGAAACTGCTACTTCTGACAAAGGAGAGATACGTCAGCTTCTTGAACGAAGGACAGTGTCAAATTTCCTTTCAAGTGGCTTCCGAGAAAGAATGGACAAATTGATGGAATCTCACATAGGAACAGAAACACGGATTGTGAGTGGCCAGGAAGATGAGGACGACAATGGAGGGAAAATAGAGCAATTGATGGCAATTTTACAACAGCATATGCGTCATGCTCATAACCATGAAGAAGAAGAAGGTGAAGGACGAAGACAAGAGGAACAAGAAGAAGAAGATGATGAAGAAGAAGAAGTAGAAGAGGAGAAGGCTGAGGATGAGGATGGGGAAGAAGAAGAGAGCTTGATGAATGGCACTTACAATGAAAACAGTGATTATTGTACTCAGTCCTCACCATCTGTAGATATTCCTAATTCCTCTCCTAATTTGTCAACATGGAGTTACAGAGACAACGAAGCTAGTGATGATTCTGACAGAGTTGAGTCGACATCCTCAACCCAACGTTCTACTTCTCAGTCTTTCTACCATGAGACTCGCCAGTACTCAGCATCCACTCATCCTCATTCAATGGACATGGATCTGATATATGATTTGAGAGGGCAGATGGAGCAACTCTATCGAGAAATGTCTGAGATAAGAAAATCATTGAAGAGCTGCATAGATATGCAGATCGCATCGAAACAATCAATGAAACGTGATGTTAACATAGTTAGAGAAAAGAAGAAGTCCCATGATCACAGACCCAAGAAAGGCAATTGTTGTATTTGCTATGACAAGAAAGTTGACTCACTTTTATATAGATGTGGGCACATGTGTACGTGTCTGAAATGTGCGAATGAGTTGCAATGGAACAGTGGAAAATGTCCAATATGTCGAGCTCCAATAGTAGATGTTGTGAGAGTATATGTGGATGCATAG 2700 0.4481 MASSQVEIALTSPFGCVLRRYNRRETCRESNSRASSHGGFQNDDRSFVREHRNATICNSATPKDEKKTSNNVTHNIQINLDDAKKKKNDNNNCNLGNMGFTKKEKEEESSSSSRQSQILDRWAARKAREMVSTIETEAELLETLGSSPSSLSSSSSSRPPSSSTSSEISNRGASSLVQIWEKRLNNINQSSIDTKSIGSLSATSCNGSSSLLLGEYSDESSSCSEFVSERASSVSVTNEPTCSTPRVADIIKRLTLSIGEENNCEQEKEQCNSMTTGSSSSLSKVRVRAPTTEQAEHRTVVQVTNSPRLRGRQAFTDLLTQIERDRHGELNNLAQLAPVSNFSQRSRSRIQSHLRLKLLQRRQTLKTSEVNKQPQGSTIMHLRERFNVKVEHESIGQIEVASPRTPRPSQFNKDPHTNSNQSSRSEHHSGSVGFEGVTNLNDACQTVHSVNGDNHNATCAQNQKPVYQTEEEEARPSSETCMEAHNAVPQETAETSASNMVDSNANHEIENEAEAEAKAKQCNSAEPESCFVDEATNEEECGSEEQHGEGNDYENDDGLEQHYDDEAYYDWIGPISRPRSYWEDRRQAWYREMLETATSDKGEIRQLLERRTVSNFLSSGFRERMDKLMESHIGTETRIVSGQEDEDDNGGKIEQLMAILQQHMRHAHNHEEEEGEGRRQEEQEEEDDEEEEVEEEKAEDEDGEEEESLMNGTYNENSDYCTQSSPSVDIPNSSPNLSTWSYRDNEASDDSDRVESTSSTQRSTSQSFYHETRQYSASTHPHSMDMDLIYDLRGQMEQLYREMSEIRKSLKSCIDMQIASKQSMKRDVNIVREKKKSHDHRPKKGNCCICYDKKVDSLLYRCGHMCTCLKCANELQWNSGKCPICRAPIVDVVRVYVDA 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3111 899 MobiDBLite consensus disorder prediction 403 434 - -
Dere02g3111 899 MobiDBLite consensus disorder prediction 143 170 - -
Dere02g3111 899 CDD mRING-HC-C3HC5_NEU1 844 896 - -
Dere02g3111 899 MobiDBLite consensus disorder prediction 757 778 - -
Dere02g3111 899 MobiDBLite consensus disorder prediction 664 778 - -
Dere02g3111 899 MobiDBLite consensus disorder prediction 710 744 - -
Dere02g3111 899 MobiDBLite consensus disorder prediction 80 118 - -
Dere02g3111 899 ProSiteProfiles Zinc finger RING-type profile. 847 886 IPR001841 -
Dere02g3111 899 MobiDBLite consensus disorder prediction 678 709 - -
Dere02g3111 899 Pfam Zinc finger, C3HC4 type (RING finger) 844 891 - -
Dere02g3111 899 MobiDBLite consensus disorder prediction 455 498 - -
Dere02g3111 899 SUPERFAMILY RING/U-box 846 892 - -
Dere02g3111 899 MobiDBLite consensus disorder prediction 396 434 - -
Dere02g3111 899 MobiDBLite consensus disorder prediction 541 559 - -
Dere02g3111 899 Coils Coil 653 706 - -
Dere02g3111 899 MobiDBLite consensus disorder prediction 483 498 - -
Dere02g3111 899 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 821 898 IPR013083 -
Dere02g3111 899 MobiDBLite consensus disorder prediction 536 559 - -
Dere02g3111 899 PANTHER BNAC05G24000D PROTEIN 1 898 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3111 Dere-ChrDere02 37328268 37333909 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3111 847 895 C3H Transcription Factor Family AT3G06140 42.857 1.08e-07 53.1