Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3058 ATGTCCTTCCTCACCAACCTTGGCCTTGGCTACTCCATTGCCATAGCCCTTGCCTTCCTTGTGCTTCTCTCCACTCTCATTCTCTCTACCTACCTCTGCTGCCGTAACCGCAGCCGCAACCCTAATCCGATTCCGAATCCGAATGTGAACCCAAGTGGGTCGAGTTCGAACCCTGATGGTATTGTTTTGCCCCGGATAATCTTCGTGGCTGAGGATGATGATGAGGGTCGTGACTCGGAGAGCGCGGTCGTGGGTCTGGACGAGAATGTTATCAATTCTTACCCGAGGTTGCAGTACTGTAAGGGTATTGGAAGCAGCACGACGTGTTCCATCTGTCTGTGTGAGTACAGGGAGTCGGAGATGCTGAGGATGATGCCGGATTGTCGCCATTACTTCCACCTCTGGTGCCTCGACGCCTGGCTTAAGCTTAATGGGTCGTGCCCTATTTGCCGGAACTCGCCGCTCCCGACGCCGCTTTCGACGCCTCTGCAAGAGGTGGTGCCGCTCTCTCAGTACGCTGCTGATCGGAGGCGGCGGAGTTGGAAGAGGAGAAAATGGGGAATGGAGGAAGCTGGGAGTGCAGGGTTAGTAGTAGTTGTATTCGCAGGTGAAATGTCATTTTGTTAG 627 0.5423 MSFLTNLGLGYSIAIALAFLVLLSTLILSTYLCCRNRSRNPNPIPNPNVNPSGSSSNPDGIVLPRIIFVAEDDDEGRDSESAVVGLDENVINSYPRLQYCKGIGSSTTCSICLCEYRESEMLRMMPDCRHYFHLWCLDAWLKLNGSCPICRNSPLPTPLSTPLQEVVPLSQYAADRRRRSWKRRKWGMEEAGSAGLVVVVFAGEMSFC 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3058 208 SUPERFAMILY RING/U-box 108 156 - -
Dere02g3058 208 Pfam Ring finger domain 108 151 IPR001841 -
Dere02g3058 208 PANTHER RING-H2 FINGER PROTEIN ATL67 3 179 IPR044289 GO:0016567|GO:0016740
Dere02g3058 208 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Dere02g3058 208 SMART ring_2 109 150 IPR001841 -
Dere02g3058 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 155 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3058 Dere-ChrDere02 36499938 36500731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3058 85 177 C3H Transcription Factor Family AT2G35910 55.789 4.36e-34 119