Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3051 ATGGCAATCGCAGCAACCTCATCGTCTCCCACCATGAGCCTCAGCCATAGCCATAGCCATGACGACACTGCCACAACCGCCGCCACCTCCGCCACCCTCGACGGCCCCCATAATAGGCCCGACGAGGACGACGACGATGGCGACAACCACGAGCATGACATGGTGATGCCTGGGTTTCGCTTCCACCCAACTGAAGAAGAACTTGTGGAGTTCTACCTTCGCCGTAAGGTAGAGGGCAAGCGTTTCAACGTCGAGCTAATCACTTTCCTCGATCTCTATCGATATGACCCTTGGGAGCTTCCTGCTTTGGCAGCGATTGGAGAGAAGGAATGGTACTTCTATGTGCCAAGAGATAGGAAATATCGGAACGGTGATCGTCCCAATCGTGTGACTACTTCTGGGTACTGGAAGGCAACTGGGGCTGATAGAATGATCCGAACTGAGAGCTTAAGATCCATTGGGTTGAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCTAAAGGCATTCGAACCAGTTGGATTATGAACGAGTATCGCTTGCCTCACCATGACACTGAACGCTTTCAAAAGGCTGAGATATCTCTTTGTCGAGTCTACAAGAGAGCTGGTGTAGAAGACCATCCCTCTCTCCCTCGTTGTCTCCCAACCAGACTGTCCTCCTCGACATCATCAAGAGCTTCAGACAAGAATAAGTACTGCAACGTTAACGAAATGGTTCAGCATCATCAGAACATGGGATTTCTGGGACAACCTCAGCATCATCATCCCCACCATCATCAAATTGATCAAATAGTTGACAAAATTAATAACGAAACTGATCAGGGAAGCAGTAGTAGTAGTACTACTACTAACAATAATGCAATATTAATGGTGGATGATCACAATAGGCTCTTGACTTATAATAACCAAGAGTTACAATACTACAACAGTACTATTAGTGCTCCTCCTCCTCCATCTCAAGCTTATCAACATCCTCATCATCATCATCTTCAGTTCCCTAATCTGCTATTGCAGCGGCCACAACAGCTACAACAACCAATGGTGGCTCTGAATAATTCGCTTCCAATTACCTCTTTCTCTGACAGATTGTGGGAGTGGAATCCAGTCCCCGAGGCTGCAAACCGAGAGTTCAGCAACATTTCCTTCAAGGAGTTACCTTGA 1164 0.4708 MAIAATSSSPTMSLSHSHSHDDTATTAATSATLDGPHNRPDEDDDDGDNHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTESLRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPHHDTERFQKAEISLCRVYKRAGVEDHPSLPRCLPTRLSSSTSSRASDKNKYCNVNEMVQHHQNMGFLGQPQHHHPHHHQIDQIVDKINNETDQGSSSSSTTTNNNAILMVDDHNRLLTYNNQELQYYNSTISAPPPPSQAYQHPHHHHLQFPNLLLQRPQQLQQPMVALNNSLPITSFSDRLWEWNPVPEAANREFSNISFKELP 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3051 387 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 52 280 - -
Dere02g3051 387 SUPERFAMILY NAC domain 55 201 IPR036093 GO:0003677|GO:0006355
Dere02g3051 387 MobiDBLite consensus disorder prediction 1 33 - -
Dere02g3051 387 ProSiteProfiles NAC domain profile. 55 202 IPR003441 GO:0003677|GO:0006355
Dere02g3051 387 Gene3D NAC domain 64 205 IPR036093 GO:0003677|GO:0006355
Dere02g3051 387 FunFam NAC domain-containing protein 35 64 205 - -
Dere02g3051 387 Pfam No apical meristem (NAM) protein 57 181 IPR003441 GO:0003677|GO:0006355
Dere02g3051 387 MobiDBLite consensus disorder prediction 36 56 - -
Dere02g3051 387 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3051 Dere-ChrDere02 36393600 36398514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3051 54 228 NAC Transcription Factor Family AT2G02450 88.202 8.27e-115 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere02g3051 NAM 3.8e-34 No_clan