Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3045 ATGTCGGAAATGCGGGTTTCTGATCTCCACTTGAAGAGGGAGCTCACTCAAATTCGCAAAGCTGCTCGGGTATTAAGGGATCCTGGAACTACTTCTTCCTGGAAGTCACCACTTAGTTCCTCGAGATCTGTTGCTGCTGCTACTGCTTCTGCTTCTGCATGGAAGAACAGTGGCAACTCTCAACTTCATTCTCAGTACTCTCTCCCAAGTGGGAACAACAATGGGAAGGAGAAGATGGTGTTCTTGTATAATTGGAAGAATTACAAATCGTCAAGCGAGAAGCACAATGGCGATGACAAAGAAGAAGAGTACGATGAAGATGGTGGTGGGAATGACGGATCTTCGTCTCTTCTTGGAAGTTTCGAGGATAGCCTTAGTGATGCTCGTAATGGCTGCGATTCGAAGAGCGATAGTTACTTGGGGGGTGGTCGGAGTGGGATTCGTTCTTCCATTTTCAGGTGTAGAGATGCAAATCTTGTTCCGTTGGGCACACCATCGAGTAGAAGAGCAATGGGGACTAAGAAAAAGAGTAAGAAAATCAATAATGCCCATTTGGATATTCTGAGAAATTATCAGCTAAGAGAAACCAATGTTGGTAAAAATTTGGTAAATCCCAAGCATCATCGATCAATGGCTTATAGCCGTGAGGACTCAGTTGAGCAGTCTGATGATACAGAAGACTACTGTAATTCTGAAGATTTAACACGAAATTCAGGGCCATCCCCTTTGCTTTTGAAGCTCAAGCATAAGAATTGGTCTCGCTCTAACTCCAAGTTATTGAGAAGTAGTAGAAAAGAGGATTCTTCTTACAGTACCCCTGCAATGTCTACGAGTTCTTATAATAGGTATGGTCAACATAATCCAAGTACTGTCGGATCCTGGGATGGCACGACAACCTCAGTGAATGATGCGGATGATGAGATAGATGATCTTTTGGATTTGCCTGGTCGCCAGGGATGTGGTATTCCTTGCTATTGGTCCAAGAAGACTCCAAAACATAGAGGGATGTGTGGGAGTTGTTATTCACCTTCACTCTCAGACACTCTAAGGAGGAAAGGAAGTAGCATACTCTGTGGAAGTCAAACTATCTATCCTAGACACCGGAGATCCTTATCGCTCTCCAACAAGCGGAGAGTTTCCTCAAGATGTGCTCAAGGTGTTCTCCCATTGCTCACTAACAGTGATGGTAGAGGAGGATCTTCTCTAGGAACTGGCAGGAGTGATGATGAACTTTCTACAAACTTTGGGGAGCTTGATCTTGAGGGTATAAGCCGGTTGGATGGAAGAAGGTGGTCATCAAGTTGTAGAAGTCAAGAAGGATTGGAGATTGTAGCTTTTAATGGAGAAGGGGATGAGGAAGGCACGCCTGAAAATAGTAGGACTTTCAGTCAAAAGTATAAACCTATGTTCTTTAGTGAATTGATTGGGCAGAATATTGTGGTCCAGTCACTTATAAATGCTGTTTCAAGGGGTCGAATTGCTCCTGTTTATCTTTTCCAAGGTCCACGTGGGACTGGTAAAACATCAACAGCCAGGATTTTTGCTGGTGCATTGAATTGTATAGCTCCCGATGAAAGTAAGCCTTGTGGCTACTGCAGGGAATGTACTGATTTCATTTCTGGCAAGAGCAGGGATCTTTTGGAAGTTGATGGAACCAACAAGAAAGGGATTGATAGAGTTAGACATCTATTAAAAAGATTATCAGTGGGGTCTTCATCAGCCTCCTCGCGATACATGGTCTTTGTTATTGATGAGTGTCATTTGTTAACCTCTAAGACGTGGCTGGCATTTCTCAAGTTTCTGGAAGATCCACCTCAGCGAGTTGTATTCATATTTATATCAACTGATCTTGACAACATGCCCCGATCAATACAGTCTAGATGCCAGAAGTTCCTTTTTAACAAAATCAAAGATGTAGATATTGTGGCACGGCTGAGAAAAATATCTGATGAGGAGAACCTGGATGTTGAAACTGATGCATTGGATCTTATTGCTATGAATGCAGATGGTTCACTTCGGGATGCAGAGACCATGTTAGAACAGCTGAGTTTGCTGGGAAAAAGAATTACCACTTGTCTTGTCAATGAACTTGTCGGTGTTGTTTCAGATGAAAAATTGCTGGAACTTTTGGAGTTAGCAATGTCATCAGACACTGCAGAAACAGTGAAAAGGGCCAGAGAATTGATGGACTCTGGAGTTGATCCAATTGTTTTGATGTCCCAACTGGCTAGCCTCATTATGGACATTATTGCTGGATCATATACTGTAATAGATGACAAACCTGGTGATTCGTTATGTGGTGGACGAAGTTTGAATGAATCAGAGTTGGAGAGATTAAAGCATGCTTTGAAGCTTCTTTCAGAGGCTGAGAAACAGTTGAGGACTTCTAGTGAACGCTCGACATGGTTCACAGCTACTCTCTTACAGCTCGGTTCAATGCCTTCATCAGATCTTACTCAGTCCACTAGCGGCAGGAGGCAGAGCTGTAAGACAACTGATGATGACCCATCAAGTGCTTCGAGAGAAATAACTTCTTTCAAGCATAAGTCAGATGTTCAGTATATGCATCGAAAGTCAACATCACCTGCATCCCTACAAAAAGCTGTAAATAGTAATCCTGGCCATAAAAGGGAATTTTCATCAAAGTTTGATGGTCTCAGCTTGAATATAAAGCCATCAAATAGCCCAGTCATAGATGACGATGCCACACCTGTCTCATGTGATGATCTTACAGTTAGTAATGCAATGTTTAGATGCATGGATTCAGGAAAGTTATATGATATCTGGGCACGTTGTATTGGGAGGTGTCACTCAAAGACATTGAGGCAGCTACTACATAATCATGGAAAACTTGTATCCATATGTGAATTTGAAGGTCTTCTGGTTGCATATGTAGCATTTGGGGATGGAGATATTAAACTTAGGGCTGAAAGGTTTTTAAGTAGCATTACAAACTCCATGGAAATGGTTCTGAGACGAAATGTAGAGGTCAGAATTATCCACTTGCCTGGTGGTGAAGGTGAAGATAGGATCAATCTACCAGGTCTAAAGCAGGTTGAGTCAATAAGTGAGAAGGAACATAGAGGAGATCATACAAAAGGAAGAGATGCTTATTCAGAATTTCCTCCTTTGCTGGATGGAAACTTTCAATCTACCAATGATTCCTCAGATTTACTGGCTGACAGAGATGGTGTAAGAGAGAGAAGGCCAGATATTCCAATGCAAAGGATTGAATCTATCATTCGTGAGCAGAGGCTGGAAACCGCCTGGTTACAGGCTGTTGGAAAAGGTTCCCCTGGATCGTTAAGTCGTCTGAGACCTGAGAAGAATCAGGTCCTGCCTCAGGAAGGTATTTACTGTAAAGACCCAATGGAGTCCATGGATTCAGTGAAGTTTTCCTCTCAGCATAGGGAAGATGACATCAATCACGAAGTCAGAGTTTTGAAGGTTAAAAATGGAAGGATCTTACAGAAGGATCAGATTGGAAGAAGGACTGATTGTTATCCCATGTCCCCTAGTTTATTGCATGATAACAGTTTAGTAACAAATTCCATCAGAGACAATCTGGGATACGAATCAGGCTCAGGAGCTAGAGGTTGTAGTGGATTTTTATGTTGGAATAACTCCAACCGTAGAAGGGTAAAGGTAAAAGGTACCCCAGTTGGAGGGCGTAAAGTTGGACGCTTTTCATTGTTTGGTGAGTGCGCCAAGTCAAAGAAAAGGAATTAA 3729 0.4242 MSEMRVSDLHLKRELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAATASASAWKNSGNSQLHSQYSLPSGNNNGKEKMVFLYNWKNYKSSSEKHNGDDKEEEYDEDGGGNDGSSSLLGSFEDSLSDARNGCDSKSDSYLGGGRSGIRSSIFRCRDANLVPLGTPSSRRAMGTKKKSKKINNAHLDILRNYQLRETNVGKNLVNPKHHRSMAYSREDSVEQSDDTEDYCNSEDLTRNSGPSPLLLKLKHKNWSRSNSKLLRSSRKEDSSYSTPAMSTSSYNRYGQHNPSTVGSWDGTTTSVNDADDEIDDLLDLPGRQGCGIPCYWSKKTPKHRGMCGSCYSPSLSDTLRRKGSSILCGSQTIYPRHRRSLSLSNKRRVSSRCAQGVLPLLTNSDGRGGSSLGTGRSDDELSTNFGELDLEGISRLDGRRWSSSCRSQEGLEIVAFNGEGDEEGTPENSRTFSQKYKPMFFSELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAGALNCIAPDESKPCGYCRECTDFISGKSRDLLEVDGTNKKGIDRVRHLLKRLSVGSSSASSRYMVFVIDECHLLTSKTWLAFLKFLEDPPQRVVFIFISTDLDNMPRSIQSRCQKFLFNKIKDVDIVARLRKISDEENLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTCLVNELVGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPIVLMSQLASLIMDIIAGSYTVIDDKPGDSLCGGRSLNESELERLKHALKLLSEAEKQLRTSSERSTWFTATLLQLGSMPSSDLTQSTSGRRQSCKTTDDDPSSASREITSFKHKSDVQYMHRKSTSPASLQKAVNSNPGHKREFSSKFDGLSLNIKPSNSPVIDDDATPVSCDDLTVSNAMFRCMDSGKLYDIWARCIGRCHSKTLRQLLHNHGKLVSICEFEGLLVAYVAFGDGDIKLRAERFLSSITNSMEMVLRRNVEVRIIHLPGGEGEDRINLPGLKQVESISEKEHRGDHTKGRDAYSEFPPLLDGNFQSTNDSSDLLADRDGVRERRPDIPMQRIESIIREQRLETAWLQAVGKGSPGSLSRLRPEKNQVLPQEGIYCKDPMESMDSVKFSSQHREDDINHEVRVLKVKNGRILQKDQIGRRTDCYPMSPSLLHDNSLVTNSIRDNLGYESGSGARGCSGFLCWNNSNRRRVKVKGTPVGGRKVGRFSLFGECAKSKKRN 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3045 1242 NCBIfam DNA polymerase III subunit gamma/tau 461 810 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Dere02g3045 1242 MobiDBLite consensus disorder prediction 1022 1043 - -
Dere02g3045 1242 Coils Coil 772 799 - -
Dere02g3045 1242 MobiDBLite consensus disorder prediction 856 876 - -
Dere02g3045 1242 FunFam DNA polymerase III subunit gamma/tau 457 635 - -
Dere02g3045 1242 SMART AAA_5 493 637 IPR003593 GO:0016887
Dere02g3045 1242 MobiDBLite consensus disorder prediction 91 120 - -
Dere02g3045 1242 CDD AAA 475 633 - -
Dere02g3045 1242 MobiDBLite consensus disorder prediction 255 302 - -
Dere02g3045 1242 FunFam DNA polymerase III subunit gamma/tau 637 699 - -
Dere02g3045 1242 Pfam DNA polymerase III subunits gamma and tau domain III 693 755 IPR022754 GO:0003887
Dere02g3045 1242 Gene3D - 638 699 - -
Dere02g3045 1242 MobiDBLite consensus disorder prediction 1022 1037 - -
Dere02g3045 1242 SUPERFAMILY post-AAA+ oligomerization domain-like 707 808 IPR008921 GO:0003677|GO:0006260
Dere02g3045 1242 MobiDBLite consensus disorder prediction 266 301 - -
Dere02g3045 1242 MobiDBLite consensus disorder prediction 828 855 - -
Dere02g3045 1242 CDD HLD_clamp_pol_III_gamma_tau 636 699 IPR045085 -
Dere02g3045 1242 Gene3D - 453 634 IPR027417 -
Dere02g3045 1242 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 464 851 - -
Dere02g3045 1242 Gene3D - 700 814 - -
Dere02g3045 1242 Pfam DNA polymerase III, delta subunit 476 636 - -
Dere02g3045 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 683 IPR027417 -
Dere02g3045 1242 MobiDBLite consensus disorder prediction 204 243 - -
Dere02g3045 1242 MobiDBLite consensus disorder prediction 814 876 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3045 Dere-ChrDere02 36320092 36326850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3045 457 803 Core DNA Replication Machinery Family AT1G21690 25.905 6.92e-18 84.7