Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3037 ATGGAACTTTCCAGTGAAGAAGGAGAGATCCCAATCCCAATAAACTCTAGTACTACTTATTGTGGTGGGGGGGGACATGGGAGTAATGGGCATGGACATGGCCACATCATCCATCATCATGACCCTCCAATCCACACCCATATGATCTCCAACTCCTCAGTAGTACCACCACCACCCCCTTCGAATGGAGGAGGAGGAGGAGGAGGAGGACTGGAGGAGCATGGTGGGTCCTACAGCAGCAGCAACAAGAAAGCAGTGGTGAAGTACAGAGAGTGCCTGAAGAACCATGCAGCCTCCATGGGAGGGAATGCCACAGATGGGTGTGGAGAGTTCATGCCCAGTGGAGAAGAAGGCACCCTTGAAGCCCTCACCTGCTCTGCCTGCCATTGCCACAGAAACTTCCATAGAAAAGAAGTTGAAGGCCATGAACATGACCTTGATCATCATCATCTCCTTCAGACTCACCACCACCCCTACAGGTTGGGGGGTAGGAAGTTCCTCCTCCCTCCTCCTCCTCCTCATCCTCATACCGCAGAAACCCTGGGGTATCCTACAGTCCCATCTGCACCAGGTAACATCCTACCTTCTAGAATGATCATGCCCTACAATGTCATGGGGTCCCACCACCACTCCCAGTACCACTCTCTCCCTTCAGATCAGTTATCTGATGAGCAAGAAGCTGATCAGGGAAGGCCACACCAGAAGAAGAGGTTTAGGACCAAGTTCACACAGGAGCAGAAGGAGAAGATGCTGAACTTTGCTGAGAGAGTTGGGTGGAAGATTCAGAAGCAGGAGGAGTCTGTGGTGCAACAGTTCTGCCAAGAGATTGGTGTGAAGAGAAGAGTGCTTAAGGAAACTGCATTATTGGTTGAAGTTTCAGTTCTGAGTGATGATGATGTTTCTCTTAAGCCATTTTATTTAGTGAAAGACATGGATGCAGCACTGTGTTTGAGGGCAGCGTACTTGTGTCATAGGTTACCTGTGGTAACTGTCGCAAAAGGAAGCTATTTAATACTCTACTTTTATCATTAA 1032 0.4913 MELSSEEGEIPIPINSSTTYCGGGGHGSNGHGHGHIIHHHDPPIHTHMISNSSVVPPPPPSNGGGGGGGGLEEHGGSYSSSNKKAVVKYRECLKNHAASMGGNATDGCGEFMPSGEEGTLEALTCSACHCHRNFHRKEVEGHEHDLDHHHLLQTHHHPYRLGGRKFLLPPPPPHPHTAETLGYPTVPSAPGNILPSRMIMPYNVMGSHHHSQYHSLPSDQLSDEQEADQGRPHQKKRFRTKFTQEQKEKMLNFAERVGWKIQKQEESVVQQFCQEIGVKRRVLKETALLVEVSVLSDDDVSLKPFYLVKDMDAALCLRAAYLCHRLPVVTVAKGSYLILYFYH 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3037 343 MobiDBLite consensus disorder prediction 208 223 - -
Dere02g3037 343 MobiDBLite consensus disorder prediction 1 79 - -
Dere02g3037 343 Pfam ZF-HD protein dimerisation region 87 139 IPR006456 -
Dere02g3037 343 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 89 138 IPR006456 -
Dere02g3037 343 MobiDBLite consensus disorder prediction 208 238 - -
Dere02g3037 343 MobiDBLite consensus disorder prediction 224 238 - -
Dere02g3037 343 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 88 139 IPR006456 -
Dere02g3037 343 SUPERFAMILY Homeodomain-like 223 284 IPR009057 -
Dere02g3037 343 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 74 284 - -
Dere02g3037 343 MobiDBLite consensus disorder prediction 10 24 - -
Dere02g3037 343 NCBIfam homeobox domain, ZF-HD class 235 284 IPR006455 -
Dere02g3037 343 Gene3D - 220 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3037 Dere-ChrDere02 36221503 36223300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3037 1 284 ZF-HD Transcription Factor Family AT1G14440 48.485 3.99e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dere02g3037 ZF-HD_dimer 4.4e-29 No_clan