Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3028 ATGCGCGTGGATCGCTCACCCTGGGACAGTGGGGAACCTGTTGGGTTTTCAGGGCACGCCTTGTGTAGCTGTTCTCTCTCCCTCAAATCTAGAGAGAGAAAGGGGTGCGTGAAAGAGAAGGGAGAGGGAAAGAGAGAGAAGGAGCTGAAAAAGAGGCAAGCAGGGAATAGGGGGTCGTGTCGGCTTCAACCAAACACGACCTTGTCAACTCATCTTGGAGAACCATTTAACACCAAAAGTTCTCCTAAATTCTCGGTTCTTTTCAAGATTATCCGTATGGCATTTATGGCTTCAAATCAGACTTCTGGTGGAAATCGCACAGGGGCAATCAATGATGATTTATACAAGGAATTGTGGCATGCCTGTGCTGGTCCCCTTGTCACTCTTCCTCGTGAAGGGGAGCGAGTTTATTACTTTCCGCAGGGTCACATGGAACAGCTTGAGGCATCGATGCATCAGGGGTCAGAACAGCAAATGCCTTCCTTCAATTTGCCTTCTAAAATCCTGTGTAAGGTCGTCAATGTCCATCTTCGGGCTGAACCTGAAACAGATGAAGTTTATGCGCAGATAACTCTGCTTCCTGAAGCAAATCAAAGTGAAGTGACAAGCCCTGATGATCCTCTGCCAGAGCCTACGAGGTGCACAGTCCATTCCTTTTGCAAAACGCTTACTGCATCTGACACCAGCACCCATGGTGGTTTTTCTGTTCTTCGGAGACATGCAGATGATTGTCTACCACCACTGGATATGTCTCAGCAGCCACCATGGCAAGAATTAGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTCGACATATATTTCGAGGGCAACCTAGGCGCCACTTACTCACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTGGTAGCTGGTGATGCATTTATATTCCTAAGAGGTGAAAATGGAGAGCTGCGTGTTGGGGTTAGGAGGCTCATGAGACAACAAAACAATATGCCATCTTCTGTTATTTCCAGTCATAGTATGCATCTTGGTGTTCTGGCCACTGCATCTCATGCCATAGCCACTGGAACACTGTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGATCAGAGTTTATTGTGAGTCTCAACAAATATCTTGAAGCTCGAAGTCATAAGCTTTCTGTAGGGATGAGATTCAAAATGAGATTTGAGGGCGATGAAGTTCCTGAAAGAAGGTTCAGTGGCACAATTGTGGGTGTTGGAGATAACAACTCACCAGTCTGGGCAGATTCTGAGTGGCGATCATTAAAGGTGCAATGGGATGAACCCTCATCTATTTTGCGTCCTGATAGAGTTTCTCCTTGGGAATTGGAGCCACTTGTGGCCACCGCTCCTGCAAACCCGCAACCAACCCAGAGAAATAAGAGGGCTCGTCCTCCCATTCTACCTTCAGCAGTACCTGATTCTTCTCTGCATGGCACATGGAAATCACCAGTTGAATCTCCATCTCTCTCCTATCGTGACTCACAACATGGACGGGATCTCTATCCATCATCTAAGTTCAATTCTACTACAACTAACTTTCTTGCTTTTGGTGGGAATAACTCTATTGGGGCTGCTTCCAACAATTCCATATATTGGTCTAATAGGGTGGAGAACTCTAAAGAGTATCTTTCACCTATGGCTATTAAAGAATCTGGTGAAAAGAAACAGGGAACTGGAAATGGCTGTAGGCTCTTTGGGATTCAGCTACTTGAAAATTCCAATGTAGAAGAAAGTATGCCCAGAGCCACACTGTCAGAGAGGGTGGGGGATGATAGGTCTGTTCCATGTTTAGATGCCGAGTCTGATCAGCATTCTGAACCATCAAATGTCAATGGAGTAAGTTGTGAAGCTGACAAATCAAGCCTTCAGTCTCCTCAGGAATCACAAAGCAGGCAACTAAGGAGCTGCACTAAGGTTCACATGCAAGGAATGGCTGTTGGAAGGGCTGTGGATTTGACACGGTTTGATGGATATGAGGATCTGCTTAATAAATTGGAGGAAATGTTTGACATCAAGGGTGAGCTTGGTAGATCCATGAAAAAATGGCAGGTTGTCTACACTGATAATGAAGATGATATGATGATGGTCGGAGATGATCCATGGCATGAGTTCTGTACTGTGGTGAGGAAAATTTTCATCTACACACCAGAGGAAGTGAAGAAGCTTTCACCCAAAATAGGACTTCCAATAAATGAAGAAATTAAACCAAGCAAGTTGGATCCTGAAGCAGCACTCAATACCGAGGACCAGTCATCTATTGTGGGGCCTGGTTGCTAA 2292 0.4538 MRVDRSPWDSGEPVGFSGHALCSCSLSLKSRERKGCVKEKGEGKREKELKKRQAGNRGSCRLQPNTTLSTHLGEPFNTKSSPKFSVLFKIIRMAFMASNQTSGGNRTGAINDDLYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMHQGSEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEANQSEVTSPDDPLPEPTRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSLNKYLEARSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNNSPVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVATAPANPQPTQRNKRARPPILPSAVPDSSLHGTWKSPVESPSLSYRDSQHGRDLYPSSKFNSTTTNFLAFGGNNSIGAASNNSIYWSNRVENSKEYLSPMAIKESGEKKQGTGNGCRLFGIQLLENSNVEESMPRATLSERVGDDRSVPCLDAESDQHSEPSNVNGVSCEADKSSLQSPQESQSRQLRSCTKVHMQGMAVGRAVDLTRFDGYEDLLNKLEEMFDIKGELGRSMKKWQVVYTDNEDDMMMVGDDPWHEFCTVVRKIFIYTPEEVKKLSPKIGLPINEEIKPSKLDPEAALNTEDQSSIVGPGC 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3028 763 MobiDBLite consensus disorder prediction 588 604 - -
Dere02g3028 763 MobiDBLite consensus disorder prediction 581 637 - -
Dere02g3028 763 Gene3D - 382 455 - -
Dere02g3028 763 MobiDBLite consensus disorder prediction 31 66 - -
Dere02g3028 763 MobiDBLite consensus disorder prediction 452 501 - -
Dere02g3028 763 FunFam Auxin response factor 634 728 - -
Dere02g3028 763 Gene3D - 634 728 - -
Dere02g3028 763 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 113 728 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere02g3028 763 MobiDBLite consensus disorder prediction 31 55 - -
Dere02g3028 763 CDD B3_DNA 217 319 IPR003340 GO:0003677
Dere02g3028 763 FunFam Auxin response factor 382 454 - -
Dere02g3028 763 Pfam Auxin response factor 345 427 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dere02g3028 763 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Dere02g3028 763 Pfam B3 DNA binding domain 219 319 IPR003340 GO:0003677
Dere02g3028 763 ProSiteProfiles PB1 domain profile. 639 732 IPR000270 GO:0005515
Dere02g3028 763 SUPERFAMILY CAD & PB1 domains 641 716 - -
Dere02g3028 763 Gene3D - 216 321 IPR015300 -
Dere02g3028 763 SUPERFAMILY DNA-binding pseudobarrel domain 208 348 IPR015300 -
Dere02g3028 763 SMART B3_2 219 321 IPR003340 GO:0003677
Dere02g3028 763 ProSiteProfiles B3 DNA-binding domain profile. 219 321 IPR003340 GO:0003677
Dere02g3028 763 MobiDBLite consensus disorder prediction 607 637 - -
Dere02g3028 763 MobiDBLite consensus disorder prediction 480 498 - -
Dere02g3028 763 FunFam Auxin response factor 217 321 - -
Dere02g3028 763 Pfam AUX/IAA family 630 675 IPR033389 -
Dere02g3028 763 Pfam AUX/IAA family 686 729 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3028 Dere-ChrDere02 36052626 36062086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3028 96 757 B3 DNA Binding Superfamily AT1G59750 70.404 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere02g3028 B3 8.8e-20 CL0405