Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3026 ATGGAAGAACCATCGAAGGAGGAAGAAGACGAACAGAGGGCTACGTGCACTGAAAAGAATGAGGAAGATGAGAAGGTTGTACCATCGGGAGGTATAAATCGGAAAGAGAAGAGGAAGGCTATCAAGAAACTGAAGCGGAAGCAAATGAGGAAGGAGATCGCAACGAAGGAGCGCGAGGAGGAGGAGGCTCGGCTCAACGATCCCGAGGAGCAGAGAAGACTACAGCTGTTGGAGCGCGAAGAGGCCGAGAGGTTTGAAATGGAAAGGAAGCTGTTTGAGGATAAAGAGAGGGCGTGGATCGAGGCTATGGAGAAGAAGATGAAGGAGGCTGCGGAAGAAGAGCAGAGGAAGCTTCTCGAAGAAACTCATAAGCAACAGCAACAGAAGGAGAATGAATTGAATGAGGATGATGAATGGGAATATGTGGAGGAAGGGCCTGCAGAGATTATTTGGCAAGGAAACGAGATCATCTTTAAGAAGAAAACAGTGAGGGTTCCAAAGAAGGATTCGGGCCACCAAGTTAAAAAGGAGAATGTTGATAGGCCTACATCAAATCCTCTGCCTCCAGAATCTGAAGTTTTTGCTGATGACTCCAATTTATCAGCTGTTTCTGCACAGCAGGTTCTTGAGAGTGTAGCACAACAAGTACCAAATTTCGGAACTGAACAGGATAAAGCTCACTGTCCCTTTCATTTAAAAACTGGAGCTTGTCGATTTGGTCAACGTTGTAGCAGAGTCCATTTTTACCCTGATAAATCATGCACGCTTCTTATGAAAAACATGTACAATGGTCCTGGCCTTGCTTGGGAACATGATGAGGGGCTTGAGTTGCTGCATATGATATGTGGCTTTGTTCAGGAATGCAACATCCAAGTCATGGGTTGTGGAGCTGTGTTGCAGACTAATGTTCATTACATCCTAAGGGTTGATATTGCAGGCAGCAAGACCTAA 951 0.4574 MEEPSKEEEDEQRATCTEKNEEDEKVVPSGGINRKEKRKAIKKLKRKQMRKEIATKEREEEEARLNDPEEQRRLQLLEREEAERFEMERKLFEDKERAWIEAMEKKMKEAAEEEQRKLLEETHKQQQQKENELNEDDEWEYVEEGPAEIIWQGNEIIFKKKTVRVPKKDSGHQVKKENVDRPTSNPLPPESEVFADDSNLSAVSAQQVLESVAQQVPNFGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPDKSCTLLMKNMYNGPGLAWEHDEGLELLHMICGFVQECNIQVMGCGAVLQTNVHYILRVDIAGSKT 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3026 316 Coils Coil 77 97 - -
Dere02g3026 316 MobiDBLite consensus disorder prediction 50 72 - -
Dere02g3026 316 Coils Coil 32 71 - -
Dere02g3026 316 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 247 IPR000571 GO:0046872
Dere02g3026 316 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 216 277 IPR009145 GO:0000398|GO:0003723|GO:0089701
Dere02g3026 316 MobiDBLite consensus disorder prediction 109 132 - -
Dere02g3026 316 MobiDBLite consensus disorder prediction 8 35 - -
Dere02g3026 316 MobiDBLite consensus disorder prediction 167 190 - -
Dere02g3026 316 Coils Coil 100 136 - -
Dere02g3026 316 PRINTS U2 auxiliary factor small subunit signature 247 267 IPR009145 GO:0000398|GO:0003723|GO:0089701
Dere02g3026 316 PRINTS U2 auxiliary factor small subunit signature 228 247 IPR009145 GO:0000398|GO:0003723|GO:0089701
Dere02g3026 316 ProSiteProfiles Zinc finger C3H1-type profile. 222 250 IPR000571 GO:0046872
Dere02g3026 316 MobiDBLite consensus disorder prediction 1 72 - -
Dere02g3026 316 MobiDBLite consensus disorder prediction 109 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3026 Dere-ChrDere02 36012583 36015313 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere02g3026 zf-CCCH 7.6e-05 CL0537