Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2965 ATGTCCATCCTCTTCGATAAACGTCTGAGCAAAACAGACGTGAAGCACAGACTCTCATTCCCCTCCAAAATGCTTCGCCATCTTCCGCCCTTTCCAGAAGGTTCCAACAGGGTCAGGATCACCGTTCGCGTCGGGTCTGAGGGCGGGGCGCGGGAGCTCTATTGCTCGACCCGGAGATTGGGCCGATATCAAAAGCCCGTCGTCGAGAGAGGCTGGACGCAAATTGTTGCAGAGAAGAAGCTCAAGGAAGGTGACGTCCTCATATTCTCGAAGGACAGGGCTCATCATGGAGATTACAGAATTGAGGTCAAGAGAACAATAAGGCTCATGGGCTGGCACATTGGGGCCAGAATTGTATGA 360 0.5278 MSILFDKRLSKTDVKHRLSFPSKMLRHLPPFPEGSNRVRITVRVGSEGGARELYCSTRRLGRYQKPVVERGWTQIVAEKKLKEGDVLIFSKDRAHHGDYRIEVKRTIRLMGWHIGARIV 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2965 119 Gene3D - 1 109 IPR015300 -
Dere02g2965 119 Pfam B3 DNA binding domain 7 103 IPR003340 GO:0003677
Dere02g2965 119 SUPERFAMILY DNA-binding pseudobarrel domain 4 97 IPR015300 -
Dere02g2965 119 CDD B3_DNA 4 105 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2965 Dere-ChrDere02 34173499 34173858 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere02g2965 B3 5.9e-08 CL0405