Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2963 ATGGTGCCAAATCGAAGTCTGAATCTAAGAAACCCAATGCAAAGAAAGGATATCATTGCCCAAATAATATCTGCTAGCATTGCTAGTTACATTGTTCTTGCTACAACTTATGCACATGAATTGCCTCGCTATGGCCTTAAAGTAGGTCTTACTAACTATGCAGTAGCATATTGCACTGGAGTCCTTTTGACTTGTCGAGTCCTTAAAATGCTTGAAATGGATGAAGAGTATGAGGGGAATCTTGAGGCTACAGGAAAGGATTTTTCAGTTGAACCTACTGATACTAGGAGGTCATTCCGTGCCTTTCTTGATGTTGGTCTTATTAGAACTACAACTGGAAACTGGCCCTTTGGTGCCCTGAAGGGAGCTTTGGATGGTGGTTTAGATATTCCTCATAGTGATAAAGGATTTGCTAGTTTTGATAAGGAAAAGAAACAACTTGATCCTGAGGTTCACCGCAAATATATCTTTGGTAGTCATGTTGCTGCCTACATGAAGACTTTGATGGAAGATGAACCTGAGAAATACCAGTCACACTTCAGCAAATATATCAAGCAAGGAATAGAGCTTGACGGAATTGAGGAGATATACAAAAAGGTTCATGCAACCATTTGTGCTGATCCTACTATGAAGAAGTCAGATAAGCAACCACCGAAGGAACATAAGAGCCATTCACCTTCTGCAGGTTAG 690 0.4043 MVPNRSLNLRNPMQRKDIIAQIISASIASYIVLATTYAHELPRYGLKVGLTNYAVAYCTGVLLTCRVLKMLEMDEEYEGNLEATGKDFSVEPTDTRRSFRAFLDVGLIRTTTGNWPFGALKGALDGGLDIPHSDKGFASFDKEKKQLDPEVHRKYIFGSHVAAYMKTLMEDEPEKYQSHFSKYIKQGIELDGIEEIYKKVHATICADPTMKKSDKQPPKEHKSHSPSAG 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2963 229 PANTHER RIBOSOMAL PROTEIN L5-RELATED 15 224 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Dere02g2963 229 MobiDBLite consensus disorder prediction 208 229 - -
Dere02g2963 229 Pfam Ribosomal L18 C-terminal region 193 225 IPR025607 -
Dere02g2963 229 SUPERFAMILY Translational machinery components 15 210 - -
Dere02g2963 229 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 133 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Dere02g2963 229 Gene3D - 10 228 - -
Dere02g2963 229 PRINTS Ribosomal protein L5 signature 164 184 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Dere02g2963 229 PRINTS Ribosomal protein L5 signature 102 121 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Dere02g2963 229 PRINTS Ribosomal protein L5 signature 122 141 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Dere02g2963 229 PRINTS Ribosomal protein L5 signature 42 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2963 Dere-ChrDere02 34148819 34150305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2963 16 225 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 73.810 1.73e-114 328