Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2952 ATGCATGCTCTTAAGATGGGTAACAGCTATGAAGGCTGTGGGAAGACTTTTATAGATGCTGGTGCTCTGAGGAAGCATTCTCGCATCCATGGAGAGAGGCAATTTGTTTGCCACTACGAGGGATGTGGACAGGTGTTAAAGTGTTGGGTTGAGCTAACCAGTCTGGTTCAGTTGTACGCAGTACTGCTACTGATGGTGTTATCTGTTCTGTTATCACCTCCTCTTGCTTGGCTGCCATAG 240 0.4708 MHALKMGNSYEGCGKTFIDAGALRKHSRIHGERQFVCHYEGCGQVLKCWVELTSLVQLYAVLLLMVLSVLLSPPLAWLP 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2952 79 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 9 44 - -
Dere02g2952 79 Gene3D Classic Zinc Finger 9 31 - -
Dere02g2952 79 SUPERFAMILY beta-beta-alpha zinc fingers 10 42 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2952 Dere-ChrDere02 33860380 33863099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2952 11 55 C2H2 Transcription Factor Family AT4G06634 52.174 2.67e-11 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere02g2952 None None None