Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2942 ATGTCTCCTCATCCTCACCCGCCCAATCCGATCCATTTCTTCAAGGTCATCCTCAAAACTAGTCTTGAAAGGATTAAAATTCCAAACAAATTTACAGGGAGATATGGAGGTGGTTTGCCAAACCCAGTGTTTCTCAAGCCTCCTGATGGGAAAGAATGGAAAGTGTATTGGACAAAACATGATAATGGGCTTTGGTTTGAAAAGGGGTGGAAGGAATTTGCTATCTTTTACTCTCTGGACCAATGGCATTGGGTGCTGATCAAATATGAAGGAACTTCTCAGTTTGATGTACTCATATTAGACCAGAGTGCCCTAGAAATAGACTATCTTTCTAAGGATACTTCTGGTCTAAAGGACAACTTTGATAGTCGTAGTGATGATACAATTGAAATCTTGGATGAGATGCCTCTGAACCAAAAGGCTAGGCCCAAAACACCATTGTCATCTTCTTGGCCTCATAAAAAAATGAGAACTGCCACACATGAAGATGTTGAGAAGAGAAGCTCCAATCGGCTGAATTTGCATATGGGTGTCAAAACTGATGATGGTCAATCACTAGGAACAGAGTTCCAGAAATCAACCAATGCAGAATTGAAATTTTGTAAGCAGGAACCAGAAGAAGACATGGGAGGAAGAATTCATGCCCGGGGTAAATGCCTGAATTCTGAGCATCTGAGAAGGATGAAAGCATTAACTCCTTTGGAAAAGACCAAAGCTTTGAAGAGAGCCAATACTTTCAGATCTGAAAATCCCTTTTTCATGGTAGTCATGCAGCCCTCATATGTCCATAGTGAATGTTACTTGCCAATTCCAGCAAAGATTGCTGAAAAAGGTTTGAAGACAAAGTATGGAGTTGTGCAACTTCAGGCCTTGGATGGGAGAACTTGGTCTGCTAAGTATAATAGTCACAGAATCAGAGCTGGTTGGGAGAAGTTTGTAATGGATAATAATTTGAAAGTGGGTGATCTTTGTGTTTTTGAAATGATCGACTCCTTATTCAGAGTATATATATTTAGGGAAGCTGAAGAAGGAAATCTGAAACTTAATCCTTCTAAACAGATGCAGATCAACAGTATGCAGCATACAGCTCTTGAAAACGCTAGTTCTTACAAATCTAAAAATCCATATTTCATTGCTAACATGACATGCTCTTACATTCTTGGCAAATTAAACTTGCATGTGCCAATGAAATTTGCCGAAATATATCTTGATATCAAAAACAGTACTGGGAGTGTCAAACTTCTCGTACAAGATGGAGTTTGGTCTGTTGGGTACGTACGCAGAAGTTCTGGTAAACAGCAAGTGGCTGAATTTTCTTGTGGATGGAAGCAATTTTGTAAGGATAATGGCTTGAAAGTTGGTGATGTCTGCGTGTTTGAGCTCATTCAGAGAATCAAGCTTACATTTCAAGTGACAATTTTTTGA 1425 0.3937 MSPHPHPPNPIHFFKVILKTSLERIKIPNKFTGRYGGGLPNPVFLKPPDGKEWKVYWTKHDNGLWFEKGWKEFAIFYSLDQWHWVLIKYEGTSQFDVLILDQSALEIDYLSKDTSGLKDNFDSRSDDTIEILDEMPLNQKARPKTPLSSSWPHKKMRTATHEDVEKRSSNRLNLHMGVKTDDGQSLGTEFQKSTNAELKFCKQEPEEDMGGRIHARGKCLNSEHLRRMKALTPLEKTKALKRANTFRSENPFFMVVMQPSYVHSECYLPIPAKIAEKGLKTKYGVVQLQALDGRTWSAKYNSHRIRAGWEKFVMDNNLKVGDLCVFEMIDSLFRVYIFREAEEGNLKLNPSKQMQINSMQHTALENASSYKSKNPYFIANMTCSYILGKLNLHVPMKFAEIYLDIKNSTGSVKLLVQDGVWSVGYVRRSSGKQQVAEFSCGWKQFCKDNGLKVGDVCVFELIQRIKLTFQVTIF 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2942 474 Gene3D - 8 104 IPR015300 -
Dere02g2942 474 ProSiteProfiles B3 DNA-binding domain profile. 253 341 IPR003340 GO:0003677
Dere02g2942 474 CDD B3_DNA 375 474 IPR003340 GO:0003677
Dere02g2942 474 Pfam B3 DNA binding domain 20 99 IPR003340 GO:0003677
Dere02g2942 474 Pfam B3 DNA binding domain 377 474 IPR003340 GO:0003677
Dere02g2942 474 Pfam B3 DNA binding domain 253 340 IPR003340 GO:0003677
Dere02g2942 474 SUPERFAMILY DNA-binding pseudobarrel domain 370 474 IPR015300 -
Dere02g2942 474 SMART B3_2 377 473 IPR003340 GO:0003677
Dere02g2942 474 SMART B3_2 13 103 IPR003340 GO:0003677
Dere02g2942 474 SMART B3_2 253 341 IPR003340 GO:0003677
Dere02g2942 474 Gene3D - 231 343 IPR015300 -
Dere02g2942 474 Gene3D - 356 474 IPR015300 -
Dere02g2942 474 CDD B3_DNA 251 339 IPR003340 GO:0003677
Dere02g2942 474 SUPERFAMILY DNA-binding pseudobarrel domain 8 103 IPR015300 -
Dere02g2942 474 CDD B3_DNA 13 101 IPR003340 GO:0003677
Dere02g2942 474 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 358 474 IPR044837 -
Dere02g2942 474 MobiDBLite consensus disorder prediction 140 167 - -
Dere02g2942 474 SUPERFAMILY DNA-binding pseudobarrel domain 246 339 IPR015300 -
Dere02g2942 474 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Dere02g2942 474 ProSiteProfiles B3 DNA-binding domain profile. 377 474 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2942 Dere-ChrDere02 33588492 33592428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2942 360 474 B3 DNA Binding Superfamily AT3G18990 33.043 4.81e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere02g2942 B3 1.3e-15 CL0405