Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2891 ATGGCTTTCCAAAACCAATCCATGTCAGTTTCACCCCAGCGAAAGATGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACCACAAATCGCCAAGTCACCTTCTGCAAGCGCAGAAATGGGCTGCTCAAGAAGGCCTATGAACTATCTGTGCTCTGTGATGCAGAGGTTGCTTTAATCGTCTTCTCTAGCCGTGGCCGTCTCTATGAATATGCTAATAACAGATCTGGTGCAATAGATAGAAATAGAAGCACTATGGGTTTGGGTAAAAATTCTTTTACGAACCCAGTGAAAGAGGGTGATGAACCAATAAGAGAGTCCCATCAGGCTCGACATAATAATTTCACCACTGTTGTGGGTTTATCGAGGTGGACAAAAAGTTTTGATCTTGGGTATTATCCGCTTGTCAAATGGGTTTCCGTCAAGTGGCAGAGAGCAATGACCCTAGAAATGGTTGAACCAATCATATTGTGGGAACCTGTGCCAGCGTGGCAGAGGCAACCAATAACTAGGTCGAGGAAATTAAGTGTCAAAGCAACTATTGAGAGGTACAAGAAAGCATGCTCAGATTCTACTGGTGGATCTACTTCTGAGATTAATGCTCAGTACTACCAGCAAGAAGCCGCCAAACTGCGTGCACAGATTAGTAACCTACAGAATCACAACAGGCAAATGATGGGAGAGGGTTTGGGCAATCTGGGTGCCAAGGAGCTTAAAAACCTGGAGACTAGGTTAGAAAGAGGGATTAGCAGAATTCGTTCCAAAAAGAATGAGCTGCTATTTGCAGAAATTGAATACATGCAGAAGAGGGAGATAGACTTGCATAACAACAACCAGCTTCTTCGAGCCAAGATAGCTGAAAGTGAGAGGAACCAGCAGAACATGAATGTGGTGGGCGCAGGAGGAACAGATTATGAATCTATGCAATCTCAGCAGCAATTTGACAGTCGAGGTTACTTCCAAGTCTCTGCATTACAACCCAATCATCAGTATCCTCGCCAAGATCACATGGCCCTTCAATTAGGATTTCAAATGAAGGCAATCTATGATTCATCCAGAAAAATGCATTCTAATGTGTTTGTTGATGAGAAAGGGCAAGACTTGAGTGTTTCTTCTGCTTCTATTTTGGAGTTTAGTATGATATTGATAGCAGATGAATGTTGA 1167 0.4319 MAFQNQSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNRSGAIDRNRSTMGLGKNSFTNPVKEGDEPIRESHQARHNNFTTVVGLSRWTKSFDLGYYPLVKWVSVKWQRAMTLEMVEPIILWEPVPAWQRQPITRSRKLSVKATIERYKKACSDSTGGSTSEINAQYYQQEAAKLRAQISNLQNHNRQMMGEGLGNLGAKELKNLETRLERGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNQQNMNVVGAGGTDYESMQSQQQFDSRGYFQVSALQPNHQYPRQDHMALQLGFQMKAIYDSSRKMHSNVFVDEKGQDLSVSSASILEFSMILIADEC 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2891 388 Pfam K-box region 198 286 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere02g2891 388 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Dere02g2891 388 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Dere02g2891 388 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Dere02g2891 388 CDD MADS_MEF2_like 17 75 IPR033896 GO:0000977|GO:0045944
Dere02g2891 388 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 296 - -
Dere02g2891 388 SUPERFAMILY SRF-like 17 76 IPR036879 GO:0003677|GO:0046983
Dere02g2891 388 Coils Coil 202 229 - -
Dere02g2891 388 Coils Coil 239 259 - -
Dere02g2891 388 FunFam MADS-box transcription factor 21 28 93 - -
Dere02g2891 388 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Dere02g2891 388 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Dere02g2891 388 ProSiteProfiles K-box domain profile. 202 292 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere02g2891 388 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Dere02g2891 388 Gene3D - 28 89 IPR036879 GO:0003677|GO:0046983
Dere02g2891 388 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2891 Dere-ChrDere02 32448368 32455474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2891 14 82 MADS-box Gene Family AT3G58780 85.714 1.59e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere02g2891 K-box 7.2e-27 No_clan