Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2877 ATGAGCAGAAGCCTGAGGTTTGTTACTGCGGTGGGAGTTTCCTTACTGGTGATGGATGAAGCTCAGAGTAGTTATAGTTCCCTGCCTCCATTCCTGACAAAGACTTATGAGATGGTGGACGATCCTTCCACAGATTCGATTGTTTCCTGGAGTGCCACTAATAAAAGTTTCGTAGTATGGAATCCGCCAGAATTTGCAAGTGAGTTGCTACCAAGATTCTTTAAGCACAATAACTTCTCAAGTTTCATCAGACAGCTGAATACATATGGTTTTAGAAAAGTTGACCCAGAACAATGGGAATTTGCAAATGATGATTTCATAAGAGGTCAACCACATCTTTTGAAGAATATTCATAGGCGAAAGCCAGTTCATAGCCATTCTTTACAGAATCTCCAAGGTCAAGGAGCTTCTCCATTAACAGAATCAGAAAGGCAGAGTTTGAAAGACGATATAGAGAGGCTGAAACATGAAAATGAACAACTATATTTAGAGTTACAGAGGCATGAACAGGAGTGGCAAGTAAATGAGATACAAATAGGATGCTCCAAGGAGCGATTGGAAAAGTTGGAAAGGAATCAACAAAAGATGGTATCTTCTGTTTCTCAGGTGTTGCAGAAACCTGGAATTGCCATAAATCTCTTGCAACTTTCAGAAACCCTGTATAGAAAACGAAGGTTGCCAAGAAGTGGTTACTTTTGTAGTGAAGCTGGCATTGAAGATGCTATGGAAACTTCCCCAGTGATACCTAGAGATAATGCTGACAATACCTCTGTTTTGACATTAAACATGGAGCGACTGGATCAGCTAGAGTCATCACTGGTATTTTGGGGGAACATTGCTCATGATTTTGGCGATACTGTTGTTCATAGTCATTCAAATATGGATTTTGATGAATCTACGAGTTGCATTGATAGTCCTTCTATCTCTTGTGTGCAACTTGATGTTGAATTTCGGCCCAAGTCATCTGTAATTGACATGAACTCTGAGCCAGCTGTAGCTACAGTTCCTGATCCTGTCTCATCAAAAGGAGAACCTGTAGGAACAACCACTGTAGCAACTGGTGTTAACGATGTTTTCTGGGAACAATTCTTGACAGAGAATCCCGGTTCTTCAGAAACACAGGAAGTGCAGTCAGAACAAAAGGATTCTGATATCAGAAAGAATGAAGAAAAACCTAATGACCGCAGTAAACTTTGGTGGAACTTAAGCAATGTAAATAACCTTCCGGAACAAATGGGACATCTTAGTCAAACAGAGAAAACTTAA 1266 0.4021 MSRSLRFVTAVGVSLLVMDEAQSSYSSLPPFLTKTYEMVDDPSTDSIVSWSATNKSFVVWNPPEFASELLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFIRGQPHLLKNIHRRKPVHSHSLQNLQGQGASPLTESERQSLKDDIERLKHENEQLYLELQRHEQEWQVNEIQIGCSKERLEKLERNQQKMVSSVSQVLQKPGIAINLLQLSETLYRKRRLPRSGYFCSEAGIEDAMETSPVIPRDNADNTSVLTLNMERLDQLESSLVFWGNIAHDFGDTVVHSHSNMDFDESTSCIDSPSISCVQLDVEFRPKSSVIDMNSEPAVATVPDPVSSKGEPVGTTTVATGVNDVFWEQFLTENPGSSETQEVQSEQKDSDIRKNEEKPNDRSKLWWNLSNVNNLPEQMGHLSQTEKT 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2877 421 FunFam Heat shock transcription factor 1 24 121 - -
Dere02g2877 421 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 244 IPR027725 -
Dere02g2877 421 MobiDBLite consensus disorder prediction 124 144 - -
Dere02g2877 421 Coils Coil 144 171 - -
Dere02g2877 421 MobiDBLite consensus disorder prediction 126 142 - -
Dere02g2877 421 MobiDBLite consensus disorder prediction 367 398 - -
Dere02g2877 421 SUPERFAMILY "Winged helix" DNA-binding domain 26 120 IPR036390 -
Dere02g2877 421 MobiDBLite consensus disorder prediction 377 396 - -
Dere02g2877 421 Gene3D - 23 121 IPR036388 -
Dere02g2877 421 SMART hsfneu3 27 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere02g2877 421 Pfam HSF-type DNA-binding 31 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere02g2877 421 PRINTS Heat shock factor (HSF) domain signature 31 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere02g2877 421 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere02g2877 421 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere02g2877 421 ProSitePatterns HSF-type DNA-binding domain signature. 70 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2877 Dere-ChrDere02 32266982 32268575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2877 24 421 HSF AT4G18880 52.463 1.68e-126 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dere02g2877 HSF_DNA-bind 1.5e-32 CL0123