Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2875 ATGCATGTGTTTGTGCACGTAATTCAATGGGCAGCTCTTGGATCTGAGCTCAAATGGTGCCTGTTGGTGACTAAGACTCCTTCCCTGGGTACTGCTCCCGGGTCTGGTTCAAAGTTCATATTTTTGGATTCGGCCGTCAGGCGTGTTAATGGTGTCATCATGACTAGGGCCGTTCGTTGTAGGATACTAAAGGAGGCGAATGGTGATATTAATGATCATCTACGCAACCATCTTCATCTAACAAACTGTATTCACTTGAAGAACCATATGCACAAGACCAGCCCCATACTGGGTGATAGGTCACTTACGAGGGACCTTGTTGCGTTGCAGAGGTCACACTCTCTCAGGGACCCTTCTGCAAGTCCTTCATCATGGCATTCATCTTCTATAGTTGATATGCTTTCCAAGAGAGTTAAAAATGATACCATGATTCAGGAGGGAAGAAGGTCTGTAGGCATTGAGCGCAGGAAGGATGGCAGGAGATCATCAGGACGCTCACCACTTCCGGTTACTTTAGGTACATCAAAAGTTGCTCCAAGTGAGGGGGGTAACGATGGTGTAGTAGCAGCTAGTGAATATGATGTCAGGAGTGGAATGGGGAATGGGATGAAAGTTGGGAGAGAAGCACCTGACTGGAAGATTGATAGGCCTGATTACTTGGGTGTCAATGAAAAGCAACCTCTCAATCAACATGGCAAAAATTTAGCTCAAGTCATTTCAAGGCATTCTCAATCTAAAGAGAAAAAGGGCAAACAGAATGGGAAGCAGGGTCGAGATGTCCAAGTCAAGACCCTTTCTGAGCAGCTGAATGATGTTCCCCTTGATAGTGATGATTTAGCTTCTTCGAACATTCATCCTTGTAGGAGGTCTCCTGGACAGGGGAAAACTATTAAGGAGCGAGAACCCAGCATGCGTGGTAATGGTAATGCATTGAATATGGTCAAACGGTGTAAACACCGAAGTACAAGAAGAACTCGGGCTGCTATGACATTAAGAGATACTGGAGCTGAGAATGAATTGTCTGTGGCTTCCAACTCATTAACTCAAGGTTCAAACCACCGTAAATATCATATGGAGGAGACTGATGATTATGCAGATGAGAATTTGACAAGTGCTCCAAAAAATGCGTGTGGCATTCCTTGGAATTGGTCCAGAATTCATCATAGGAGTAAAACATTCCTTGACATGGCTGGAAAGAGTTTATCTTGTGGTTTATCTGACTCAAGATTGAGGAAGGGGACGTTGGCCCACAATGGAAATAATATCCTCAACATACCTGTGCCATCTGATCACTCAAGCTCTTCTACTGAGTATGATGCAGACGCACAACCTTTGCTAGTTGATGTACCTGGATCTCGAGGAAAAACTGAAAATGCTTGCAGGGGGCATGACTTTTCTGAGGAGCTTGGTATATTTGCTAGTAATTTGTACAAGCATGATGTTGATTCCAACCTTGCTTCTGAAACTAGATCTGGTGATCATCATGAGTTGAAAGGGAATCGCCAAAGCAGACACCAAAGCTTTACACAAAAATATATGCCACGGACCTTCAGAGATATGGTTGGACAAAATTTGGTGGTGCAAGCTCTATCAAATGCAGTCATAAAAAGAAAAATTGGGTTGTTATATGCGTTCTATGGACCTCATGGCACTGGAAAAACTTCCTGTGCTCGCATGTTTGCAAGAGCTTTAAATTGTCAGTCTTCAGAACACCCAAAACCTTGTGGCTTTTGTAACTCCTGCAGGGCATATGATATGGGTAAGAGTAGAAATATAAAAGAAGTTGGTCCAGTCAGTAATATTGATTTTGAGAGCATCATGGATCTGCTTGATAATATGATTATTTCCCGGATTTCATCTCAATACAGAGTGTTTATTTTTGATGACTGTGATACTCTGTCAGCTGATTACTGGAGTGCTGTAACAAAGGTCATTGATCGAGCCCCTAGACGTGTGGTTTTTATTCTTGTCAGTTCAAGTCTTGATGTATTACCTCATATAATAATATCTAGATGTCAGAAATTTTTTTTTCCAAAGCTGAAGGATTCAGATATTATATATGCAATGCAATGGATTGCTACCAAAGAAAGTTTAGAAATTGATACGGATGCCTTGAAACTCATTGCATCAAGATCAGATGGATCATTGAGGGATGCTGAAATGACCCTTGAACAATTGAGTTTGCTTGGACAGAGAATATCTGTTCCTCTTGTTCAGGAATTGGCAGGGCTTATATCTGATGAGAAATTGGTCGAGTTGCTTGATTTGGCATTATCTGCAGACACAGTTAACACCGTGAAGAATTTGAGGGTGATCATGGAAACAGGTGTCGAGCCATTAGCTCTAATGTCACAGCTTGCTTCAGTAATTACTGATATACTTGCTGGTACCTATGATTTCACGAAAGAAAGGCAAAGAAGGAAGTTCTTTTGGAGACAGCCGTTATCCAAACGAGAAATGGGAAAGCTGCGCCAGGCTTTGAAAACTTTATCTGATGCTGAGAAGCAGTTGAGGATGTCTAACGACAAACTAACATGGTTGACAGCTGCGTTACTTCAACTTGCTCCTGACCAACAATATATGTTGCCTACTCCATCTGATTCTAGTATCAATCATAGTCCCTTGGCCCTAAACATTGCTGATGTGAGAGGAGCAGCCAGAAGAACTAGCAGAAATGTTGCCAAAGAGAGACGTTTATCAATGGATGCTAAAATGGAAAATCAACATGCTGGAATTTCAGCTCATGATATGGAAAAGTGTCTTAGTTCAGAGAGAAGACTTGCTGGGGCAGGGGTGGCTCCTCAACAGGCATCTTCACATGTTACTGATATGATTGGGATGAATGGCAGACAGATGGGTAAAAGCCATAAAGGAATTGAAGAGATATGGTTACAGGCGCTTGAGAAGATTCAAGTTAATGATCTGAAAGATTTCTTGTATCAAGAAGCCAAGCTAATCTCTGTTAGTTTCGGTGCAGCCCCAACTGTGCAGCTAATGTTCAGTTGCCAACTGACAAAATCTACTGCTGAGAAGTTCAGGGGCTTCATCTTAAACGCATTTGAATCTGTCCTTGGATCTTCTGTGACAATAGAAATTAGATGCGACTCAAAAAATGATGCAGGGGCAGGGATTCATTCACCTTTTGTTTTGCCTACTACTCAAAGTAGTTCATCTAAGATTCGAGACTTAAATACCGTTGGTGCTCAAACTCATGCTTTGCCCACTGATTCTATTGAAAAGAGAAGGGGTGAAATTGTAGAAGCAGCAGCTTCTACCGGAGAGCACAAGAGTAATGAGCAGCAAATTGATGTTCATGCAGCATCTCATAAATGTTCAGAAGGTGCATGCACACGACAAGCATCATCAGCTTCCCACAACAAGCCAACTGTGAAGCCACACTCAAGAAAGCATAAAGAACATAGACACAGTCAAAGTCTGGTTAGAAGTAAAGTACTGCTCGCCCATGTAATTCAACAGGCAGAAGGATCTGCACAGCGAGGAGGGTGGTCAAAACGCAAAGCAGTTTCCATTGCGGAAAAGCTTGAACAAGAGAATCTGAGACTGGAGCCAAGATCAAGGGGCTTACTATGCTGGAAAACATCAAGAGTAACCCGTCGGAAGGTTTGGCGTTTGAAGGTTGGAACTCGAAGACCACATGCTTTGCTGAACCTTGTGTCATGTGGGAAATGTCTGTCTGCTAAATCTCCGAGGTAG 3714 0.4257 MHVFVHVIQWAALGSELKWCLLVTKTPSLGTAPGSGSKFIFLDSAVRRVNGVIMTRAVRCRILKEANGDINDHLRNHLHLTNCIHLKNHMHKTSPILGDRSLTRDLVALQRSHSLRDPSASPSSWHSSSIVDMLSKRVKNDTMIQEGRRSVGIERRKDGRRSSGRSPLPVTLGTSKVAPSEGGNDGVVAASEYDVRSGMGNGMKVGREAPDWKIDRPDYLGVNEKQPLNQHGKNLAQVISRHSQSKEKKGKQNGKQGRDVQVKTLSEQLNDVPLDSDDLASSNIHPCRRSPGQGKTIKEREPSMRGNGNALNMVKRCKHRSTRRTRAAMTLRDTGAENELSVASNSLTQGSNHRKYHMEETDDYADENLTSAPKNACGIPWNWSRIHHRSKTFLDMAGKSLSCGLSDSRLRKGTLAHNGNNILNIPVPSDHSSSSTEYDADAQPLLVDVPGSRGKTENACRGHDFSEELGIFASNLYKHDVDSNLASETRSGDHHELKGNRQSRHQSFTQKYMPRTFRDMVGQNLVVQALSNAVIKRKIGLLYAFYGPHGTGKTSCARMFARALNCQSSEHPKPCGFCNSCRAYDMGKSRNIKEVGPVSNIDFESIMDLLDNMIISRISSQYRVFIFDDCDTLSADYWSAVTKVIDRAPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDSDIIYAMQWIATKESLEIDTDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELAGLISDEKLVELLDLALSADTVNTVKNLRVIMETGVEPLALMSQLASVITDILAGTYDFTKERQRRKFFWRQPLSKREMGKLRQALKTLSDAEKQLRMSNDKLTWLTAALLQLAPDQQYMLPTPSDSSINHSPLALNIADVRGAARRTSRNVAKERRLSMDAKMENQHAGISAHDMEKCLSSERRLAGAGVAPQQASSHVTDMIGMNGRQMGKSHKGIEEIWLQALEKIQVNDLKDFLYQEAKLISVSFGAAPTVQLMFSCQLTKSTAEKFRGFILNAFESVLGSSVTIEIRCDSKNDAGAGIHSPFVLPTTQSSSSKIRDLNTVGAQTHALPTDSIEKRRGEIVEAAASTGEHKSNEQQIDVHAASHKCSEGACTRQASSASHNKPTVKPHSRKHKEHRHSQSLVRSKVLLAHVIQQAEGSAQRGGWSKRKAVSIAEKLEQENLRLEPRSRGLLCWKTSRVTRRKVWRLKVGTRRPHALLNLVSCGKCLSAKSPR 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2875 1237 MobiDBLite consensus disorder prediction 272 309 - -
Dere02g2875 1237 MobiDBLite consensus disorder prediction 1129 1144 - -
Dere02g2875 1237 SMART AAA_5 539 680 IPR003593 GO:0016887
Dere02g2875 1237 MobiDBLite consensus disorder prediction 486 506 - -
Dere02g2875 1237 FunFam DNA polymerase III subunit gamma/tau 681 743 - -
Dere02g2875 1237 MobiDBLite consensus disorder prediction 242 256 - -
Dere02g2875 1237 Pfam DNA polymerase III, delta subunit 522 680 - -
Dere02g2875 1237 CDD HLD_clamp_pol_III_gamma_tau 680 743 IPR045085 -
Dere02g2875 1237 MobiDBLite consensus disorder prediction 142 163 - -
Dere02g2875 1237 SUPERFAMILY post-AAA+ oligomerization domain-like 751 854 IPR008921 GO:0003677|GO:0006260
Dere02g2875 1237 Gene3D - 682 743 - -
Dere02g2875 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 543 727 IPR027417 -
Dere02g2875 1237 MobiDBLite consensus disorder prediction 239 259 - -
Dere02g2875 1237 MobiDBLite consensus disorder prediction 1116 1144 - -
Dere02g2875 1237 Coils Coil 823 843 - -
Dere02g2875 1237 MobiDBLite consensus disorder prediction 486 502 - -
Dere02g2875 1237 Gene3D - 498 677 IPR027417 -
Dere02g2875 1237 NCBIfam DNA polymerase III subunit gamma/tau 506 854 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Dere02g2875 1237 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 509 909 - -
Dere02g2875 1237 MobiDBLite consensus disorder prediction 142 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2875 Dere-ChrDere02 32234872 32243235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2875 502 734 Core DNA Replication Machinery Family AT1G77470 22.747 5.51e-09 57.8