Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2858 ATGAAAACAACCAATGCGCAATCGAAGGGGAGATTAAAGAAGTCATCGTCCAGAGGCCACCACAGGTTCGTGGGTGTTCGTCAGAGGCCATCAGGCAGATGGGTGGCCGAGATCAAGGACTCAGTTCAGAAGGTTAGGCTATGGCTTGGAACATTTGACACTGCAGAAGATGCAGCTCGAGCCTATGACGCCGCAGCTCGCGCCTTGCGTGGTGCCAATGCTCGCACCAACTTTGAACTGCCGGAAACTGAAGCCTCCGGTGGTGGTGGTAATAAGTACATGCTGGATAATATGGAGCCCTTTTCCTTTGTGGATGCGTGCGAGGTAGGGAGTGATGCAGATGGAATTCTTGGTGCTCTCAGAGCCAAACTGTCTGATGATAAAGGAAAGGGAATGAACTTTCTCTCTAATGTTGGGTCTAGTGTTGTTTCCAGTTCAAATACTGATCACATCCATTCAGGGAACACAGAGCTATCAGTCTCATCCAGTTACACTAATGCTAAGAATGTGCTTGTTTCAGAACATGGCGGTGGAAATGATACTGCAGTAGTCAATGGCGGAACCACAAGCATGTGGAGCATGTGCATGGGTTGGTCCAACGAGACAGCATATGAACTGCCATGGCCTTCACACACGAATCAAGTTTCTAAAAATAGCTTCCTTGCAGATTCTGCTAGCGGTTCCACGACTCTGTGGCCACTTTCTGGGGTGGCTGAGCCTGAGTCCACCTTTGACCTGACATATTCAGATCATGGGCTATCATATAGCGATAGGAGTGGTAAAACGAACGAGGTAAGCTTACAATTGTTGCCTCAAGTTGGTGGAACAACTGAGGGCTTCTGGACATCAGAGCAACAACAGTTCGTGGTGCACTGTGACAATAACAGTGACAGTTGGTTCAGTTCCAGTGGCTCTTGGGATCCTCTGCTTTATGCTTCTTCCGAGCAAGGTTGA 954 0.4864 MKTTNAQSKGRLKKSSSRGHHRFVGVRQRPSGRWVAEIKDSVQKVRLWLGTFDTAEDAARAYDAAARALRGANARTNFELPETEASGGGGNKYMLDNMEPFSFVDACEVGSDADGILGALRAKLSDDKGKGMNFLSNVGSSVVSSSNTDHIHSGNTELSVSSSYTNAKNVLVSEHGGGNDTAVVNGGTTSMWSMCMGWSNETAYELPWPSHTNQVSKNSFLADSASGSTTLWPLSGVAEPESTFDLTYSDHGLSYSDRSGKTNEVSLQLLPQVGGTTEGFWTSEQQQFVVHCDNNSDSWFSSSGSWDPLLYASSEQG 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2858 317 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Dere02g2858 317 MobiDBLite consensus disorder prediction 1 26 - -
Dere02g2858 317 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Dere02g2858 317 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Dere02g2858 317 SUPERFAMILY DNA-binding domain 23 79 IPR016177 GO:0003677
Dere02g2858 317 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Dere02g2858 317 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 119 - -
Dere02g2858 317 FunFam ethylene-responsive transcription factor RAP2-11 21 80 - -
Dere02g2858 317 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Dere02g2858 317 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Dere02g2858 317 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2858 Dere-ChrDere02 32080868 32081821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2858 9 78 AP2-EREBP Transcription Factor Family AT5G19790 67.143 2.95e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere02g2858 AP2 7.3e-14 CL0081