Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2849 ATGGTCTCTCTTTCTGTTTCTGCCTCTGTGTGTGCTTCAGAGAAGAAGCTTGCGAACCCAATGAGGGATATCAAAGTCCAGAAGCTCGTTCTCAACATTTCCGTTGGTGAAAGTGGTGATCGTCTCACCAGAGCCGCTAAGGTGTTGGAACAATTGAGTGGCCAGACTCCAGTCTTCTCTAAGGCAAGGTACACTGTTAGGTCATTTGGAATCAGGCGTAATGAAAAGATTGCTTGCTATGTCACTGTAAGGGGTGACAAGGCAATGCAACTTCTCGAGAGTGGACTAAAGGTGAAGGAGTATGAGTTATTGAGGAGAAATTTCAGTGACACTGGCTGTTTTGGATTTGGTATTCAGGAGCACATTGATCTTGGAATCAAGTATGATCCTTCAACTGGTATCTATGGTATGGATTTCTTTGTTGTTTTAGAACGCCCTGGATACCGTGTTGGTCGACGCCGAAGATGCAAGTCCCGGGTTGGGATCCAGCACAGGGTGACTAAAGAGGATGCGATGAAGTGGTTCCAAGTTAAATATGAAGGTGTCATTCTTAACAAGGCCCAACAAATCATATCTTAG 579 0.4491 MVSLSVSASVCASEKKLANPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQQIIS 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2849 192 ProSitePatterns Ribosomal protein L5 signature. 49 65 IPR020929 GO:0003735|GO:0005840|GO:0006412
Dere02g2849 192 Gene3D - 11 187 IPR022803 -
Dere02g2849 192 Pfam Ribosomal protein L5 19 72 IPR031310 -
Dere02g2849 192 Pfam ribosomal L5P family C-terminus 76 174 IPR031309 -
Dere02g2849 192 FunFam 60S ribosomal protein L11 12 184 - -
Dere02g2849 192 SUPERFAMILY RL5-like 19 183 IPR022803 -
Dere02g2849 192 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 4 182 IPR002132 GO:0003735|GO:0005840|GO:0006412
Dere02g2849 192 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 12 186 IPR002132 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2849 Dere-ChrDere02 32028117 32030670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2849 12 190 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 94.972 1.79e-128 357