Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2848 ATGGATCAGGCAGGAAAGCAAGAAAGCAATGAGGTTTTGGATCTTGTTGATGAAGGGATAGGTAAGAAATTAAGGCATTCGATAGAAGCGGTTGCAATTGATGCAGTAGCTGGGGGCAGCTTGGGTGGTGGAGCTAGTGTAAGTGGAGATGGGTTGTCAGAAGAAATTAGTAATGATCCGGGATTGAATAAGGAACTGAAGGAGGGGCCTCCGGAAGCTATAGATCGGGACATGCGTGATCAGCAAAATACCAGTGACACATTCCACGGAGTTGATCAAGGAACAAGTTATAATTCAAGAAATTTGCTTAATGGGGTAGTGCTTGAGACTGTGGTCGTAATAGATTCTGCTGAGACAGAGCATGTTGGAGTTCATAGGAAGTTGGAAGCAAAGGTGAGTGAATCAGGGTTGAGTAAAGTATTCATGAAATCGCCAAGAAGGGCGTCTGAAGCAGATAAAAATTGCTGCGTTATTGATATAAAGTCTGGTAGCTGCAAAGAGTTTAACGAAAATTTGGAGGGTGAAAGGATTTGTAGGATTTGCCATCTGGCTGCTGGGCAACCATCGGATGCAACAGCTGCCGGCACTACTAACAATGATACGAGTGGAGATTTAATTCAGCTTGGTTGTGCGTGTAAAGATGAGCTAGGTATTGCGCACAGTCATTGTGCTGAGGCATGGTTCAAGCTGAAAGGAAACAGATTATGTGAAATATGTGGTGAGACTGCAAAAAACGTTTCTGGTGTTACTGATAATGGATTTATGGAAGAGTGGAATGAAAGAACATTCATTGGCAGCAGTAATGCCACATCAGGCATGTGTGGTGGATGCTGGCGGGGACAGCCATTTTGCAACTTCTTGATGGCATGCCTGGTAATAGCTTTCGTTCTGCCGTGGTTTTTCCGTGTAAAGATGTTCTGA 921 0.4408 MDQAGKQESNEVLDLVDEGIGKKLRHSIEAVAIDAVAGGSLGGGASVSGDGLSEEISNDPGLNKELKEGPPEAIDRDMRDQQNTSDTFHGVDQGTSYNSRNLLNGVVLETVVVIDSAETEHVGVHRKLEAKVSESGLSKVFMKSPRRASEADKNCCVIDIKSGSCKEFNENLEGERICRICHLAAGQPSDATAAGTTNNDTSGDLIQLGCACKDELGIAHSHCAEAWFKLKGNRLCEICGETAKNVSGVTDNGFMEEWNERTFIGSSNATSGMCGGCWRGQPFCNFLMACLVIAFVLPWFFRVKMF 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2848 306 MobiDBLite consensus disorder prediction 44 78 - -
Dere02g2848 306 MobiDBLite consensus disorder prediction 60 78 - -
Dere02g2848 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 250 IPR013083 -
Dere02g2848 306 PANTHER ZINC FINGER, RING-CH-TYPE 83 306 - -
Dere02g2848 306 SMART ringv_2 177 240 IPR011016 GO:0008270
Dere02g2848 306 Pfam RING-variant domain 178 239 IPR011016 GO:0008270
Dere02g2848 306 SUPERFAMILY RING/U-box 175 242 - -
Dere02g2848 306 ProSiteProfiles Zinc finger RING-CH-type profile. 170 246 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2848 Dere-ChrDere02 32020519 32023649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2848 141 305 C3H Transcription Factor Family AT5G05830 38.953 1.11e-29 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g2848 02 32020519 32023649 Dere02g2848 02 32020519 32023649 ECH