Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2846 ATGGATCTTAATGGTTCTAATGTTAATACGTGGCTGACTTGTAATGATGCAAACATGTTCCTTGTGAAATGTAATGTTATCTTTAAGATTAGACACAAGTATCGGAAGGTTCTAACGGGTGCAACAGCTGCTGGTCTTGTCTGCCATGTTCTCAAATCACGAGCTGTCTTCCTGGTCTTAAGTCTTCAATTAAACTTTTATAATTTTCTTGGTTCTTTTCAACTTCACTTCTCTCGAGGCAGCACGAGAAATTTCCAAAAGGGGTTGTGTTTTCTAGCAAAGCAAAGCGAAGTGGCTAGAAGCTCAGCAGTGAAGATTCCAGTAAAAAGTTTCAGCCTTTTCGGTCCGCTGTTTGATTTGGTTGCTTGTTTCATGGAAGATGTGAAACGAGTTGTTTGGCTTATCTTCTTTCTATGGCATTGGTTGGCAATTGCTGGTGACACTAACAATCTTCTTTCTCCAAAGGGTGTGAACTATGAAGTGGCTGCTTTGATGTCGATGAAGAATAAAATGAAAGACGAATTGCGTGTTATGGATGGTTGGGATATTAATTCAGTTGACCCTTGTACTTGGAACATGGTCGGTTGCTCAGCTGAGGGCTATGTTATTTCCCTGGACATGGCCAGTATGGGTTTATCTGGAACGCTTTCCCCAGGAATTGGAAATTTGAGCCGCCTTCGAACAGTGTCATTGCAGAACAATCAGTTATCTGGTCCCATCCCTACCGAGATAGGAAACCTTTTGGAGCTTCAGACTCTTGACCTTTCTGGTAACCAGTTTGTTGGTGAAATCCCTAGTTCTCTGGGCTTTTTGACTCGTCTAAGTTACTTGCGGCTTAATAGAAATAGACTATCTGGGCAGATTCCTCAACTCATTGCAAATCTCACAGGCCTTTCATTCTTGGACTTGTCATTCAATAATCTGAGTGGTCCCACTCCAAAAATTTTAGCAAAAGGTTACAGTATTTCAGGAAACAACCTTCTCTGCACATGGTCATCAGCACAAATTTGTGTGGGTGTCTCAAAACCATTAAATGAAACAGGTTCATCTCTAGAAAGTGGTAGTAGTCGCCATTGGGTGATTTCTGTTGCTGTTGGCATTGGTTCCACATTTGTAATTTCAGCAATGCTGCTTATCTACTGGGTGCATTGGTACAGATCAGGCATCCTTTATGCATCTTATGTAGAGCAAGATCATGAATTTGATATTGGTCATTTGAGGAGGTTTTCCTTCCGTGAATTGCAATCTGCTACTAGCAATTTCAGCCCAAAAAATATCCTAGGACAAGGTGGATTTGGTGTTGTTTACAAAGGATGTCTTCCAAATAAAATGATGGTGGCGGTGAAGAGGCTGAAAGATCCCAATTACACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAGATGATCGGCTTGGCAGTGCATCGGAATCTCTTACGTCTCTATGGCTTTTGTATGACGTCTGATGAGAGGTTACTTGTTTACCCTTACATGCCTAATGGCAGCGTTGCTGACCGCTTGAGAGACAGTTGCCGTGAAAAGCCTTCATTGGACTGGAACAGGCGAATGCGTATTGCTCTTGGCGCTGCACGTGGGCTTCTATATTTACATGAGCAGTGCAACCCTAAAATTATCCACAGGGATGTTAAGGCTGCAAACATTTTGTTAGATGAAGGTTTTGAAGCTGTGGTTGGGGATTTTGGTCTTGCTAAGCTCTTGGATCAAAGAGATTCACATGTCACAACTGCAGTGCGAGGTACTGTAGGGCACATTGCCCCAGAGTATCTCTCCACTGGACAATCTTCTGAAAAAACTGATGTTTTTGGATTTGGCATATTACTTTTGGAGCTCATTACAGGGCAGAAGGCTTTGGATGCTGGAAATGGTCAGGTCCAGAAGGGAATGATTCTTGATTGGGTCAAAACCTTATTTGAGGAAAAGCGGCTGGAAGTGCTAGTTGATAGGGATCTGAAGGGACGTTTTGATCCAATGGAGTTAGAAAAAGCAGTGGAATTGTCTTTACAGTGTACTCAATCGCATCCCACCCTCCGGCCAAAGATGTCGGAAGTCTTGAAGATCCTGGAAGGCCTAGTAGGGCAGATACAGCCAGAGGACGAGTCACAGGGTGGAGGTAACCTTTATGATGAAAGGACTTGCAGTTTCTCCAGAAACTATAGTGATGCACATGAAGAACCTTCTTTTATTATTGAAGCCATTGAGCTCTCTGGACCTCGGTGA 2235 0.4291 MDLNGSNVNTWLTCNDANMFLVKCNVIFKIRHKYRKVLTGATAAGLVCHVLKSRAVFLVLSLQLNFYNFLGSFQLHFSRGSTRNFQKGLCFLAKQSEVARSSAVKIPVKSFSLFGPLFDLVACFMEDVKRVVWLIFFLWHWLAIAGDTNNLLSPKGVNYEVAALMSMKNKMKDELRVMDGWDINSVDPCTWNMVGCSAEGYVISLDMASMGLSGTLSPGIGNLSRLRTVSLQNNQLSGPIPTEIGNLLELQTLDLSGNQFVGEIPSSLGFLTRLSYLRLNRNRLSGQIPQLIANLTGLSFLDLSFNNLSGPTPKILAKGYSISGNNLLCTWSSAQICVGVSKPLNETGSSLESGSSRHWVISVAVGIGSTFVISAMLLIYWVHWYRSGILYASYVEQDHEFDIGHLRRFSFRELQSATSNFSPKNILGQGGFGVVYKGCLPNKMMVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTSDERLLVYPYMPNGSVADRLRDSCREKPSLDWNRRMRIALGAARGLLYLHEQCNPKIIHRDVKAANILLDEGFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNGQVQKGMILDWVKTLFEEKRLEVLVDRDLKGRFDPMELEKAVELSLQCTQSHPTLRPKMSEVLKILEGLVGQIQPEDESQGGGNLYDERTCSFSRNYSDAHEEPSFIIEAIELSGPR 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2846 744 SMART serkin_6 421 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g2846 744 ProSiteProfiles Protein kinase domain profile. 421 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g2846 744 SUPERFAMILY Protein kinase-like (PK-like) 405 695 IPR011009 -
Dere02g2846 744 Pfam Leucine rich repeat N-terminal domain 158 197 IPR013210 -
Dere02g2846 744 ProSitePatterns Protein kinases ATP-binding region signature. 427 449 IPR017441 GO:0005524
Dere02g2846 744 SUPERFAMILY L domain-like 159 329 - -
Dere02g2846 744 FunFam Putative LRR receptor-like serine/threonine-protein kinase 157 339 - -
Dere02g2846 744 Gene3D Phosphorylase Kinase; domain 1 391 496 - -
Dere02g2846 744 FunFam Somatic embryogenesis receptor-like kinase 1 497 707 - -
Dere02g2846 744 Pfam Protein kinase domain 424 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g2846 744 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 133 692 - -
Dere02g2846 744 Gene3D Transferase(Phosphotransferase) domain 1 497 703 - -
Dere02g2846 744 Gene3D Ribonuclease Inhibitor 157 339 IPR032675 -
Dere02g2846 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 543 555 IPR008271 GO:0004672|GO:0006468
Dere02g2846 744 FunFam Somatic embryogenesis receptor kinase 1 391 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2846 Dere-ChrDere02 32011003 32017007 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2846 165 744 Receptor kinase-like Gene Family AT5G45780 72.633 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Dere02g2846 Pkinase 4.6e-44 CL0016