Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2839 ATGGGAGCTAAGAGAATGAACCGCGTCTTGTGCAGATTCTGGATTCTTCTGGCGCTCTTTGCTTTTGTGGAATCTTCGTGCAACAGTACCGACCAAAAGATAATATCAAAGGCGTTTCAATCTGTCACCGGGTTCAACGTTTCCTGGTTCCAGACACATGGTTCAAACTGTTCAAGAGCTCACCAGATAACCAGAATACAGCTTTCTTCCAGGAATCTAAGTGGGTCTATCTCATGGGTATTTCTCAGGAACATGTCCAAGTTGCAGGTTCTCGATCTCTCTGGGAATAAACTCCAAGGCTATGTACCTAGGTGGTTTTGGGCATGTTCAAGCTTATCGGAAGTCAATCTCTCCAAAAACAGGTTTGGAGGGAGCATTGGGTTCAAATCCACCTCGGGAAACGCTTCGTTTTCATTGGTTCAAAGTCTCAATCTCTCTCACAACAGGTTTACCAATTTGGCTCACCTCTCTGGGTTTTCGAACCTCAAAATTCTTGACCTCTCTCATAATAGTTGGGGTCATCTTCCCTCTGGGTTTGAAAACCTCACCAAGCTACAACACCTCGACCTCTCAAGCTGCAATATCAAAGGAAACGTGAAACCCATTTCTGTTCTACCCTCACTCAACTACTTGGATTTATCTAACAACACTTTCAATGGCACCTTCCCTTGCGATTTCCCTCCTCTGGACAGCCTCAATTTTCTCAACATTTCTCATAACAACTTCACAGCACTAGTTCACTTAGATAGCTACGAGAAATTTGGTAAATCAGCTTTCATCCACGCTGGTAACAACTTCACTTACACTACATCCGAAACACCCAATCTTACTCGATCTCCACCTCATCCTATATTGACCCCAGCGTTCAACAACAAAAGAGTAAAACCCAAACACAAAACTCTGGTTTTGGCGGTGTCCTCTGCTTCAGCATTTTTTCTGGTTGTGTTGTGTATATGGGTGTTTTGCATTTACAGAAAGAAGAGGCGATTGGCGAAGAAGAAGAAATGGGCAATCTCGAAGCCGGTCCCACTGGGCATCAAGGTGGAGAAATCCGGGCCGTTCGTGTTCGAGACAGAGTCAGGCAGCTCGTGGGTGGCGGACTTGAAGGAGCCGTCGTCTGCACCGGTGGTGATGTTCGAGAAGCCATTGATGAACCTCAGCTTCAAGGACTTGATCGCCGCCACGTCACTCTTCGGCAAGGACTCGCTGCTGGCGGAGGGAAGGTGTGGGCCCGTCTACAGAGCCGTCATCCCCGGTGATATCCACGTGGTAATCAAGGTCCTGGAAAACGCAAGAGACGTCGATCGTGATGACGCCATCGCTCTGTTCGTTGACCTCTCCAAGCTCAAACATCCCAACTTACTGCCACCCTCCGGTTATTGCATTGCAGGTAAGGAGAAGCTGATTTTGTACGAGTTTATGTCAAACGGCGATTTGGGTAGGTGGCTACATGAGCTGCCAACCGGGGAGACGAACGTGGAGGATTGGACAGGTGACACGTGGGAGATTCAAAACGGTGTCGGATCCCAAACCACTTGCCCGGAGAAGATGAATTGGCTAACACGACACCGTATTGCCGTCGGGCTAGCGCGTGGGCTAGCTTATCTTCACCACGCAGGATCAAAGCCCGTCGTCCACGGCCACGTTGTCACTTCAAACATCCTACTAGCCGACGACTTTGAGCCTCGAATCGCCGACGTCGGGTTCCGACACATCGGCAAGGCACAGAACCCGAACTGCACCACCGAGACGGATGTGTACTGCTTCGGGATGGTGCTGATGGAGCTGTTGACGGGAAAGCCCGGCACGGCGGAGACGGTGGTTTGGGTGAGGAAGTTGGTGAGGGAGGGGCACGGGGTGCGCGCGTTGGACGAGAGTCTGAAACTGAGTTGCGACTCGGAAAGCGAGATGGTGGAGAGCCTCCGAGTCGCGTACTTGTGTACGGGCGAGTCACCTGGGAAGAGGCCCACCATGCAGCAGGTCCTGGGTCTGCTCAAAGACATTCATCCCCTCGACGGACTCGACCCGAGTTGA 2034 0.5079 MGAKRMNRVLCRFWILLALFAFVESSCNSTDQKIISKAFQSVTGFNVSWFQTHGSNCSRAHQITRIQLSSRNLSGSISWVFLRNMSKLQVLDLSGNKLQGYVPRWFWACSSLSEVNLSKNRFGGSIGFKSTSGNASFSLVQSLNLSHNRFTNLAHLSGFSNLKILDLSHNSWGHLPSGFENLTKLQHLDLSSCNIKGNVKPISVLPSLNYLDLSNNTFNGTFPCDFPPLDSLNFLNISHNNFTALVHLDSYEKFGKSAFIHAGNNFTYTTSETPNLTRSPPHPILTPAFNNKRVKPKHKTLVLAVSSASAFFLVVLCIWVFCIYRKKRRLAKKKKWAISKPVPLGIKVEKSGPFVFETESGSSWVADLKEPSSAPVVMFEKPLMNLSFKDLIAATSLFGKDSLLAEGRCGPVYRAVIPGDIHVVIKVLENARDVDRDDAIALFVDLSKLKHPNLLPPSGYCIAGKEKLILYEFMSNGDLGRWLHELPTGETNVEDWTGDTWEIQNGVGSQTTCPEKMNWLTRHRIAVGLARGLAYLHHAGSKPVVHGHVVTSNILLADDFEPRIADVGFRHIGKAQNPNCTTETDVYCFGMVLMELLTGKPGTAETVVWVRKLVREGHGVRALDESLKLSCDSESEMVESLRVAYLCTGESPGKRPTMQQVLGLLKDIHPLDGLDPS 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2839 677 Pfam Leucine rich repeat 140 195 IPR001611 GO:0005515
Dere02g2839 677 Pfam Leucine rich repeat 63 122 IPR001611 GO:0005515
Dere02g2839 677 FunFam Calmodulin-binding receptor kinase CaMRLK 138 248 - -
Dere02g2839 677 ProSiteProfiles Protein kinase domain profile. 398 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g2839 677 ProSiteProfiles Leucine-rich repeat profile. 161 183 IPR001611 GO:0005515
Dere02g2839 677 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 47 668 - -
Dere02g2839 677 Gene3D Transferase(Phosphotransferase) domain 1 474 578 - -
Dere02g2839 677 Gene3D Ribonuclease Inhibitor 20 133 IPR032675 -
Dere02g2839 677 FunFam Putative LRR receptor-like serine/threonine-protein kinase 359 473 - -
Dere02g2839 677 Pfam Protein tyrosine and serine/threonine kinase 403 570 IPR001245 GO:0004672|GO:0006468
Dere02g2839 677 Gene3D Transferase(Phosphotransferase) domain 1 579 672 - -
Dere02g2839 677 Gene3D Ribonuclease Inhibitor 134 250 IPR032675 -
Dere02g2839 677 PRINTS Leucine-rich repeat signature 205 218 - -
Dere02g2839 677 PRINTS Leucine-rich repeat signature 88 101 - -
Dere02g2839 677 Gene3D Phosphorylase Kinase; domain 1 358 473 - -
Dere02g2839 677 SMART LRR_typ_2 85 108 IPR003591 -
Dere02g2839 677 SMART LRR_typ_2 159 181 IPR003591 -
Dere02g2839 677 SMART LRR_typ_2 229 252 IPR003591 -
Dere02g2839 677 SMART LRR_typ_2 205 224 IPR003591 -
Dere02g2839 677 SMART LRR_typ_2 137 158 IPR003591 -
Dere02g2839 677 SUPERFAMILY L domain-like 41 245 - -
Dere02g2839 677 SUPERFAMILY Protein kinase-like (PK-like) 375 665 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2839 Dere-ChrDere02 31972274 31974766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2839 36 668 Receptor kinase-like Gene Family AT5G07280 28.283 1.92e-69 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Dere02g2839 PK_Tyr_Ser-Thr 7.9e-17 CL0016