Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2836 ATGTATCGATCATCAGGCCCTCCTTTGACAGCCATAGACAGGTTCCTATGGAGCCAGCAGGCACAGAATGCTGCACACCACGACCATTATTTGTGCAGCTTCGCTTGTTCTGGCGGTCCAAATTACAAGGTTAATCTGTGGCCTAACACTGAAGTATCTGGTTGTAATGATGGGGTATGGCAGCCAAATGAGGAGGCTTTGAAATGGGCACACACACAGTTGCCTACATTGTGCAGGGAACAAGATGCTATGCATGCATTGGGAAAGCCAAATGATGGAAGTGTGGGAAGGAGAAGTCAAAAAGCGTCATCTGTATCTGTGATCAAAGGACAGTGGACTGATGAAGAAGACAGGCATAAAGACAGTTGGAGTGAAGAAGAAGAGAGGATATTGGTGGAAACACATGCCAAAGTCGGGAATCGTTGGGCAGAAATAGCAAAGAGCATTCCAGGAAGAACAGAGAACGGAATAAAGAACCATTGGAATGCCACGAAAAGAAGGCAGAACAGAAAGAGAAAGAAGAAAAACACGCACAGCTCAAATGGAAAGTCACGCTCCTCTATACTTGAAGACTACATCGGAAGCAAGAACCTAATAAGTGACACTTCCATCAACCCTATCCCTAGCAATGTAGAAAACCGCTCTGAACCCTCCTTTGAACCATATGAATATGATGACGAGTTGCTCTTCTTGCTGCATGTTTTCTCTAACAGTCAGAACCAGAAACAATCTCTTGCTGATGCTATGAACTCTGAAAATTCTTCAACTTCCTACTTCTTTTTAGACTTTTGCCAAACAGATGATGAGCAGCAGCATCTCAACCCTCACGTGACTACTGAACCTGGATTCGTGAATTCCAATTCATACGCAGAAAACAAAGAGAACATTTATGTGAGTCTCCCTGCTAAGGAGCCTATCACTCCCATCAAACACCCTCAATCTGACCTCTTTCTCTCGCACTTGCTCAATGGAACACCCAGTTCATCACTTTGCTCTGGTTTTGGAAACCAGACCCCGAAAACGGATTTGCAACTGGGGTATCAAGATAGTTCAGAAGGAAAGAGAGAGATGGACTTGATGGAATTGGTTTCTTCTCCTCAGTTTCGTACGAGCAAAAATGGCAAAATTTGA 1131 0.4412 MYRSSGPPLTAIDRFLWSQQAQNAAHHDHYLCSFACSGGPNYKVNLWPNTEVSGCNDGVWQPNEEALKWAHTQLPTLCREQDAMHALGKPNDGSVGRRSQKASSVSVIKGQWTDEEDRHKDSWSEEEERILVETHAKVGNRWAEIAKSIPGRTENGIKNHWNATKRRQNRKRKKKNTHSSNGKSRSSILEDYIGSKNLISDTSINPIPSNVENRSEPSFEPYEYDDELLFLLHVFSNSQNQKQSLADAMNSENSSTSYFFLDFCQTDDEQQHLNPHVTTEPGFVNSNSYAENKENIYVSLPAKEPITPIKHPQSDLFLSHLLNGTPSSSLCSGFGNQTPKTDLQLGYQDSSEGKREMDLMELVSSPQFRTSKNGKI 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2836 376 SMART sant 119 167 IPR001005 -
Dere02g2836 376 MobiDBLite consensus disorder prediction 163 180 - -
Dere02g2836 376 MobiDBLite consensus disorder prediction 149 187 - -
Dere02g2836 376 PANTHER MYB PROTEIN-RELATED 112 185 - -
Dere02g2836 376 Gene3D - 122 190 - -
Dere02g2836 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 169 IPR017930 -
Dere02g2836 376 ProSiteProfiles Myb-like domain profile. 115 165 IPR001005 -
Dere02g2836 376 MobiDBLite consensus disorder prediction 88 122 - -
Dere02g2836 376 SUPERFAMILY Homeodomain-like 118 173 IPR009057 -
Dere02g2836 376 Pfam Myb-like DNA-binding domain 120 162 IPR001005 -
Dere02g2836 376 CDD SANT 122 162 IPR001005 -
Dere02g2836 376 MobiDBLite consensus disorder prediction 96 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2836 Dere-ChrDere02 31948404 31950440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2836 1 364 MYB Transcription Factor Family AT5G58850 30.134 4.56e-38 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere02g2836 Myb_DNA-binding 8.5e-14 CL0123