Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2834 ATGGAGAACCAAGGCAAAATTTTGATGCAGAAATATGAGCTTGGCCGTTTGCTAGGTCAAGGCACGTTCGCTAAGGTTTACCATGCCAAAAACTTGAACTCCGGCCAGCATGTTGCTTTGAAGGTCATCGATAAAGCGAAGATTATGCAGGTTGGTTTGATCGACCAAATCAAGCGAGAGATCTCTGTGATGAGCATGGTGAAGCACCCCAACATTGTGCAGCTTTACGAAGTCATGGCGAGCAAGACCAAGATTTATTTCGCGATGGAGTACGTGAAAGGTGGAGAGCTTTTCGCTAAAGTGTCCAAAGGGAAGCTGAAGGAAGACTTGGCCAGAAAATACTTCCAGCAGCTCATTGGGGCTGTGGATTTCTGCCACAGCAGAGGGGTGTATCATCGTGACCTGAAACCAGAGAATCTTCTGCTAGACGAAAATGGGGATCTTAAAATTTCAGACTTTGGACTCAGTGCGTTGTGGGAATCCAGAAAGACCGATGGGCTTCTTCACACCATGTGTGGGACTCCAGCTTACGTAGCCCCTGAAGTGATCAACAAGAAAGGCTACGATGGAGCCAAGGCCGATATTTGGTCATGTGGGGTCATTCTGTATGTTCTTCTCGCGGGGTTTCTTCCTTTCCAAGACAGGAATTTGATCGAAATGTACAGGAAGATTAGCAGAGCAGAGTTTAAGTACCCACAATGGTTCCCACCTGAGGCTAAAAAGCTTCTCTCCAGAATCCTCGATCCAAACCCAAGGACAAGAGTAACTATGTCCATGATAAAGGAAAGACCTTGGTTTAAAAAGGGGTATAACCAGATCGAAGCACCCAAGTTGCCACCGCTATCCTCTGCATATTGTAGCGATGTTGAATCTGCCTTCGATTCATCGACTTCAGAAGATGGCTCAGTGACAAACAACGAAGCAGAAAGTTCCATGAGGCCATCTTGTTTCAATGCATTTGACATCATATCCCTGTCTTCGGGATTTGACCTTTCTCCTCTGTTCGAGAATGACAAGAATTCAAGACAGAAGACCAGATTCACCACCACAAAAGAAGCCTCCACGATAGTTTCAAAACTGGAGGAGATAGCTCAGGTGGATAGCAGATTCAAGGTGTTGAAGAAAAATGGTACAGTGAGATTGCAGGGTAGCAAGTCAGGGAGAAAGGGACAACTGGGTATAGATGCAGAGATTTTTGAAGTTACGTCGTCGTTTCACATTGTGGAGGTGCAGAAAACAGCTGGAGATACATTGGAATATATGGATTTCTGGGACCATGACTTAAAACCTTCTCTAAAGGATATAGTTTGGGAATGGCAAGGATGTGAACAGCAGGAATCTTTAGCATCTTCAACCCCAAATTAG 1365 0.4513 MENQGKILMQKYELGRLLGQGTFAKVYHAKNLNSGQHVALKVIDKAKIMQVGLIDQIKREISVMSMVKHPNIVQLYEVMASKTKIYFAMEYVKGGELFAKVSKGKLKEDLARKYFQQLIGAVDFCHSRGVYHRDLKPENLLLDENGDLKISDFGLSALWESRKTDGLLHTMCGTPAYVAPEVINKKGYDGAKADIWSCGVILYVLLAGFLPFQDRNLIEMYRKISRAEFKYPQWFPPEAKKLLSRILDPNPRTRVTMSMIKERPWFKKGYNQIEAPKLPPLSSAYCSDVESAFDSSTSEDGSVTNNEAESSMRPSCFNAFDIISLSSGFDLSPLFENDKNSRQKTRFTTTKEASTIVSKLEEIAQVDSRFKVLKKNGTVRLQGSKSGRKGQLGIDAEIFEVTSSFHIVEVQKTAGDTLEYMDFWDHDLKPSLKDIVWEWQGCEQQESLASSTPN 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2834 454 CDD STKc_SnRK3 11 265 - -
Dere02g2834 454 Gene3D Phosphorylase Kinase; domain 1 8 92 - -
Dere02g2834 454 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Dere02g2834 454 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165
Dere02g2834 454 Gene3D Transferase(Phosphotransferase) domain 1 93 278 - -
Dere02g2834 454 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g2834 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Dere02g2834 454 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g2834 454 FunFam Non-specific serine/threonine protein kinase 312 437 - -
Dere02g2834 454 CDD CIPK_C 318 433 - -
Dere02g2834 454 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 430 - -
Dere02g2834 454 FunFam Non-specific serine/threonine protein kinase 6 310 - -
Dere02g2834 454 Pfam NAF domain 314 372 IPR004041 GO:0007165
Dere02g2834 454 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Dere02g2834 454 Gene3D Kinase associated domain 1, KA1 311 438 - -
Dere02g2834 454 SUPERFAMILY Protein kinase-like (PK-like) 8 322 IPR011009 -
Dere02g2834 454 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2834 Dere-ChrDere02 31929551 31930915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2834 1 441 CBL-interacting serine-threonine protein kinases AT5G45820 66.667 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Dere02g2834 Pkinase 5e-77 CL0016