Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2807 ATGGTTTACTGCTCTTATAACTCGAATTCTACATCTGGGTTTGATATGTCGGCGCTGTTCAATCCAACTTCGCATAAAATTGTTGATTCTAATGGAGTTTCGCAAAGTGGGTTGGCATCACCCCGTTCGTTGGTTCTGAATAGTGAAAAGGGGAAGCTGATGAAGTCCCCTATGAAGATAGGAAAGAAGGAGGTGTCCGAGGCAAAAGCTTTAGCCGCTATGAAGAGCCATAGCGAAGCAGAGAGGAGGAGAAGGGAGAGAATAAATGGTCATCTTGATACACTTCGTGGTCTTGTGCCCTGCAACGAGAAGATGGATAAAGCAACGTTATTGGCTGAAGTTATCAGTCAAGTGAAAGAATTGAAGAAGAATGCAGTGGAAGCAAGCAGAGGTTTACTTATTCCAATGGATGATGATGAAGTGAAAGTTGAACCATACAACGATGAAGGAAGAGAAGGGTCCATGTCTTACATGGCATCTGTCTGCTGTGATTACCGACCTGAGCTTCTATCTGAACTAAGACAGGCTCTCGATGGCCTTCAACTACAATTGATGAGGGCAGAAATATCAACTTTGGGAGGCAGGGTGAAGAATGTGTTTTTCTTTACATGCTGCAAAAGTGAACATATCAATATTGAGGCATGCCAACTTCTTCCAAATACTGTCCACCAGGCACTAAGTTCTGTACTGGAGAAGGCTTCTAGCTCACTGGAATACTCGCTAGGAATGTCACTTCGAAGCAAGCGTCGAAGACTTTGCTTCATTGAGACATCAACTTCCTCATGA 786 0.4364 MVYCSYNSNSTSGFDMSALFNPTSHKIVDSNGVSQSGLASPRSLVLNSEKGKLMKSPMKIGKKEVSEAKALAAMKSHSEAERRRRERINGHLDTLRGLVPCNEKMDKATLLAEVISQVKELKKNAVEASRGLLIPMDDDEVKVEPYNDEGREGSMSYMASVCCDYRPELLSELRQALDGLQLQLMRAEISTLGGRVKNVFFFTCCKSEHINIEACQLLPNTVHQALSSVLEKASSSLEYSLGMSLRSKRRRLCFIETSTSS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2807 261 Pfam Helix-loop-helix DNA-binding domain 76 121 IPR011598 GO:0046983
Dere02g2807 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 124 IPR036638 GO:0046983
Dere02g2807 261 Coils Coil 170 190 - -
Dere02g2807 261 PANTHER TRANSCRIPTION FACTOR BHLH30 34 256 IPR045847 GO:0003700|GO:0006355
Dere02g2807 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 121 IPR011598 GO:0046983
Dere02g2807 261 Gene3D - 67 129 IPR036638 GO:0046983
Dere02g2807 261 SMART finulus 78 127 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2807 Dere-ChrDere02 31608924 31611559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2807 65 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 42.857 3.22e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere02g2807 HLH 2.3e-10 No_clan