Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2805 ATGGATTTCTCCAAGAAGCGCAAAACCGAGGAGAATGGAAACACCGATTCCGGGCCACCAACCACTTACACAACCGCCCTTGGCCCAGATGACATCCGCAAGATCCTGCAACCCTTCACCCAAGAACAGCTCCTTCAGCTGCTTCAATCAGCTGCTCTTAATCACCCCGACGTTCTTGAGGCCATACGTTCTGTTGCCGACCGCGACTCCACCCTTCGGAAACTCTTTGTTCGGGGGCTTGCCGGGGAAACCACCACGGAGACACTCAGCGGTGTTTTTTCCTCCTTTGGGGAGCTTGATGAGGCGATCGTTATCTTCGACAAAACGACGGGGAAGTCCAAAGGTTACGGCTTCGTGACATTCAAGCACGTTGATGGTGCTGTGCTGGCTTTGAAGGAGCCCAGCAAAAAAATTGATGGGAGAATGACGGTGACCCAGCTTGCAGCTGCTGGATTATCAGGCAGTCAAGGGACTAATGCGGCCGCTGTAGCCACAAGTGATGTTTCTGCCAGAAAAATTTTTGTGGGGAATGTGCCGTTTGATGTTTCCTCAGAGAGGCTGTTGAGTTACTTCTTGACGTATGGGGAAATCGAAGAAGGGCCTCTCGGGTTTGACAAAGGTAATGGAAAGTCCAAAGGTTTCGCATTCTTTGTGTATAAAACGGAGGAGGGTGCAAGGGCGTCTCTAGTTGATCCTGTCAAAACAATCGATGGGCATCAAGTGGTTTGTAAACTGGCCATGGATAACAAGAAAGGAAAGCCAGGAGGAGCTCCTAATCAGGGGCCCCCTGGGTTACCAGGTAATGGCATGGCAGGACAGCAACAACCATCTTTGCCTGGTCCTATGATGGGATCAAATTATGGGGGTCATGGCTCTTTTTCATCATATGGGGGATTTGGTGGTGCGCATCAGGGCCCCATGACAGTGCCTAGCAATAATTACGGGTTGCAGTCTTCAGTGCCGTCATTTGGTGCTCAGCTTCCATCAACCTTGACTCCTACTAGTGGTGGCGGCTATGGTCCTGGAATTGCAGGGGCGTATAGTGGCTCTCAATTCAGTGGGCCAACTTCTGGGGATTATGGCGCTAGGTTGCCGCCAAGTTCTGCCGGAATGCCTTCTGGAGGATATCCAGATGACTGGCTCCTGGAGGAATGTACCAAGGCATGCCGCCCTACTACTGAGGTTTTTGATGGCTTCTTGGGCGCTAATGCTTTAAATGGTTGTGCTGATTTCGTGAATGCAGACAATGAAATCTTTGGTTTTGATTACATGGACTACTATGAATTTGTTGCTGCTTCACTACCTCTGCTCTATGTGTTGTGGTTCCATTTGTGA 1335 0.5026 MDFSKKRKTEENGNTDSGPPTTYTTALGPDDIRKILQPFTQEQLLQLLQSAALNHPDVLEAIRSVADRDSTLRKLFVRGLAGETTTETLSGVFSSFGELDEAIVIFDKTTGKSKGYGFVTFKHVDGAVLALKEPSKKIDGRMTVTQLAAAGLSGSQGTNAAAVATSDVSARKIFVGNVPFDVSSERLLSYFLTYGEIEEGPLGFDKGNGKSKGFAFFVYKTEEGARASLVDPVKTIDGHQVVCKLAMDNKKGKPGGAPNQGPPGLPGNGMAGQQQPSLPGPMMGSNYGGHGSFSSYGGFGGAHQGPMTVPSNNYGLQSSVPSFGAQLPSTLTPTSGGGYGPGIAGAYSGSQFSGPTSGDYGARLPPSSAGMPSGGYPDDWLLEECTKACRPTTEVFDGFLGANALNGCADFVNADNEIFGFDYMDYYEFVAASLPLLYVLWFHL 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2805 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 150 IPR000504 GO:0003723
Dere02g2805 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 141 IPR000504 GO:0003723
Dere02g2805 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 230 IPR000504 GO:0003723
Dere02g2805 444 SMART rrm1_1 74 146 IPR000504 GO:0003723
Dere02g2805 444 SMART rrm1_1 172 244 IPR000504 GO:0003723
Dere02g2805 444 SUPERFAMILY RNA-binding domain, RBD 63 147 IPR035979 GO:0003676
Dere02g2805 444 Gene3D - 64 151 IPR012677 -
Dere02g2805 444 MobiDBLite consensus disorder prediction 249 277 - -
Dere02g2805 444 PANTHER GEO13361P1-RELATED 56 316 - -
Dere02g2805 444 SUPERFAMILY RNA-binding domain, RBD 164 269 IPR035979 GO:0003676
Dere02g2805 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 248 IPR000504 GO:0003723
Dere02g2805 444 MobiDBLite consensus disorder prediction 1 25 - -
Dere02g2805 444 Gene3D - 158 300 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2805 Dere-ChrDere02 31596179 31598827 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2805 164 371 C2H2 Transcription Factor Family AT2G19380 30.455 3.14e-18 85.5