Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2804 ATGGATTTCTCCATGAAGCGCGAAACCGAGGAGAATGGAAACACCGATTCCGGGCCACCCACCACATACACAACCGCCCTTGGCCCAGATGACATCCGCAAGATCCTGCAACCCTTCACCCAAGAACAGCTCCTTGAGCTGCTTCAATCAGCTGCTCTTAATCACCCCGACGTTCTTGAGGCCATACGTTCTGTTGCCGACCGCGACTTCACCCTTCGGAAACTCTTTGTTCGGGGGCTTGCCGGGGAAACCACCACGGAGACACTCAGCGGTGTTTTTTCCTCCTTTGGGGAGCTTGATGAGGCGATCGTTATCTTCGACAAAACGACGGGGAAGTCCAAAGGTTACGGCTTCGTGACATTCAAGCACGTTGATGGTGCTGTACTGGCTTTGAAGGAGCCCAGCAAAAAAATTGATGGGAGAATGACGGTGACCCAGCTTGCATCTGCTGGATTATCAGGCAGTCAAGGGACTAATGCGGCCGCTGTAGCCACAAGTGATGTTTCTGCCAGAAAAATTTTTGTGGGGAATGTGCCGTTTGATATTTCCTCAAAGAGGCTGTTGAGTTACTTCTTGACGTATGGGGAAATCGAAGAAGGGGCTCTCGAGTTTGACAAAGGTAATGGAAAGTCCAAAGGTTTCGCATTCTTTGTGTATGAAACGGAAGAGGGTGCAAGGGCGTCTCTAGTTGAGCCTGTCAAAACAATTGATGGGCATCAAGTGGTTTGTAAACTGGCCATGGATAACAAGAAAGGAAAGCCAGGAGGAGCTCCTAATTAG 780 0.5 MDFSMKRETEENGNTDSGPPTTYTTALGPDDIRKILQPFTQEQLLELLQSAALNHPDVLEAIRSVADRDFTLRKLFVRGLAGETTTETLSGVFSSFGELDEAIVIFDKTTGKSKGYGFVTFKHVDGAVLALKEPSKKIDGRMTVTQLASAGLSGSQGTNAAAVATSDVSARKIFVGNVPFDISSKRLLSYFLTYGEIEEGALEFDKGNGKSKGFAFFVYETEEGARASLVEPVKTIDGHQVVCKLAMDNKKGKPGGAPN 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2804 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 239 IPR000504 GO:0003723
Dere02g2804 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 141 IPR000504 GO:0003723
Dere02g2804 259 SMART rrm1_1 74 146 IPR000504 GO:0003723
Dere02g2804 259 SMART rrm1_1 172 244 IPR000504 GO:0003723
Dere02g2804 259 SUPERFAMILY RNA-binding domain, RBD 65 149 IPR035979 GO:0003676
Dere02g2804 259 Gene3D - 64 152 IPR012677 -
Dere02g2804 259 PANTHER GEO13361P1-RELATED 56 255 - -
Dere02g2804 259 SUPERFAMILY RNA-binding domain, RBD 156 255 IPR035979 GO:0003676
Dere02g2804 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 150 IPR000504 GO:0003723
Dere02g2804 259 Gene3D - 159 254 IPR012677 -
Dere02g2804 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 254 IPR000504 GO:0003723
Dere02g2804 259 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2804 Dere-ChrDere02 31588680 31589459 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2804 164 257 C2H2 Transcription Factor Family AT2G19380 39.362 1.92e-14 70.9