Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2781 ATGCATTATAGTTGGTTGGATGTTGAGAATTCAACAGGGGAGGTTACAGTGACAGCAGAACAAATCAGGACAGTAGTTGACGGTGATTGCCGAAACCTAGCGAGAGACATCCCGTACTGTAATGACCAGATTACCATTGGTGGTGGGATCAGGTACGGGCAGAACCCTTTGGTTTTAACAAGCTTGAGACGTGGTAGGTTGTCGGCCGCCAAGATCCTAATTAAGCATCTTCCTCATAGCACCAAAAGCACAGATATTAATATGGGTTCTGAAGATCGTGAAGATGACTATTCACTGAGCATAGGCCTCAAGGTCATGCTCGCCGCAGCTTTCTCTTTATTCGCTCTTGTCATACTCGTAATCATCTTCCACTGCTACGCAAGTCATCTTCGAATTCGAAGAAGCCGTCATCGAAGAAGACGCCACAGCGATCAACTGGTGTATCAGATCAGTGCTCAGATTGCACCAGTGGATGTGGAGCCACGATCACCGAACCATGAGCATCAGGGCCTTGACCCTCTGGTCATAGCCTCACTGCCTAAGCTCTCTTACAAGCAAACGGACCAGTTCAGCCAGGGCGAAGCCGTAGAGTGCTCGGTTTGCCTAGCTACCATTCTGGAAGATGCAACCATTAGGGTTTTGCCTAACTGCAAGCACATGTTTCATGCAGATTGCGTTGACACGTGGTTCGCCTCCAACACCACTTGCCCCATTTGCCGCACGGTGGCCGAACCCTTGGTGCAGTCAGGGCACAGTGTGGTTCAACCCACGGCACCGCCGGTTGTATGA 789 0.5019 MHYSWLDVENSTGEVTVTAEQIRTVVDGDCRNLARDIPYCNDQITIGGGIRYGQNPLVLTSLRRGRLSAAKILIKHLPHSTKSTDINMGSEDREDDYSLSIGLKVMLAAAFSLFALVILVIIFHCYASHLRIRRSRHRRRRHSDQLVYQISAQIAPVDVEPRSPNHEHQGLDPLVIASLPKLSYKQTDQFSQGEAVECSVCLATILEDATIRVLPNCKHMFHADCVDTWFASNTTCPICRTVAEPLVQSGHSVVQPTAPPVV 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2781 262 ProSiteProfiles Zinc finger RING-type profile. 198 240 IPR001841 -
Dere02g2781 262 FunFam E3 ubiquitin-protein ligase ATL6 160 245 - -
Dere02g2781 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 245 IPR013083 -
Dere02g2781 262 Pfam Ring finger domain 197 240 IPR001841 -
Dere02g2781 262 SMART ring_2 198 239 IPR001841 -
Dere02g2781 262 PANTHER RING FINGER DOMAIN-CONTAINING 99 241 - -
Dere02g2781 262 SUPERFAMILY RING/U-box 180 245 - -
Dere02g2781 262 SMART FANCL_C_2 194 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2781 Dere-ChrDere02 31304379 31307335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2781 101 245 C3H Transcription Factor Family AT2G42360 41.379 1.09e-27 104