Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2752 ATGATGGGTTTGATCGATCTTAACACCACCGAGGACGACGAAACGCCATCATCGGGTTCCTCTGCTTCTTTGTCCTCTCATTCGGGTATAAGCACTTCGGCTTCGGCTTCCCCTTCTTCTTCGTCCGTGTGCTTGGAGCTATGGCACGCGTGTGCGGGTCCAATGATCTCGTTGCCGAAGAAAGGAAGCAACGTAGTGTACTTCCCACAAGGCCACTTTGAGCAGCAGGTTCAGGATTTTTCGGTCTCTGCCTACAATATTCCACCCCATGTGTTCTGTCGTGTTGTAGATGTTAAGCTCCATGCGGAGGAAGGTATTGATGAGGTGTACTGCCGGGTATCGCTGGTTCCTGAAAGTGAGCAAGTTGAGAGAAAATTGCGGGAAGGGGAAATTGACGCTGATGGTGAAGATGAGGATACTGAAGCTGCAGCGAAGTCAACAACCCCACATATGTTCTGCAAGACCCTGACAGCTTCTGATACTAGCACTCATGGTGGATTCTCTGTGCCTCGTCGAGCGGCTGAGGATTGCTTTCCTCCCCTGGATTACAATCAACAGCGGCCTTCACAAGAGCTTGTGGCAAAGGATCTGCATGGCCTGGAATGGAGGTTCAGGCATATTTATCGGGGGCAGCCTCGTAGACATTTGCTTACAACTGGTTGGAGTGCTTTTGTAAACAAGAAGAAGCTTGTGTCTGGAGACGCTGTGCTGTTTCTTAGGGGTGAGGATGGAGTATTGAGATTAGGAATCCGTAGGGCATCTCAGTTAAAATGTGGTGGTACCTTTTCAGTTCCCTCTGGCCTCCAACTGAATGCTAGCACTGTCATGGATGTGATTCATGCTATATCTACAGGATGTGCTTTTAGCGTTTGCTATAATCCAAGGGTTAGCTTATCAGAGTTTGTAATACCCTTCCACAAATTCTTGAAGAGCCTTGATCAATTTTATTCAGTTGGGATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAGCGAAGATGCACAGGATTAGTTATTGGAATTAGCGATGTGGATCCTGTTAGATGGCCTGGCTCAAAATGGAAATGCCTTATGGTAAGGTGGGATGACATAGAAGCCACTAGGCATAACAGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTGCTTCCACTCCCAATAGCTTTAATGCAACTGGTTTAAAGAGGACCAGGATTGGTGTGCCCTCTGCAAAGCAAGAGTTTTCAGCTCCGAATGGGATTGGAACATCCGACTTTGGGGAATCATTAAGGTTTCATAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGCTAATGCTCCTTTTGATGTTATTAGTGCTCAGAGTCATCCCTTAACTGAAATAAGGACGTGCTATCCTGGTTCTAGCTGTTCTGGGATTGCTGCAACAGGAAATAATATCAGAATGTCGCAAGTGAATTCTGATGTTTTCTGCAATAGCATAGGCTTTAGTGAATCTTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATTCTTCCAAGCCAACCATGTGGAAGAGCCTTGTCTGTTAAGGAGGTTCGTGGAAATGGTCGCTATGGAATTTTTGATAGTTGTCAATTGCTGAGCTCCAGAAATGGGTGGTCTCCTCAGATGCAGGACAATTCTGCACATTTGCACCCTTCTGTTCCATCTGGGCAAGTGTCATCCCCACCATCTGTGTTAATGTTCCATCAAGCATTTAATCCAGTTTCAAACTGTGACTATAATAGCCTCAAATATCAGGGGATGGAGGGTAAAGTTCAATATGGTGCATTACATGCTTCTGAAATCAAAGGTGGAAAATTTCGATCAGTCTCATCCTATGAGTCTAATTTCTGCGGGCAAAATCAGGGCGGAACTAACTCTGTTGGCATGTTTGAGCGTGATCAACTGGACACATCACGTTCGCATGATTCTCTGCCATCACTCAGAGGTAGTCAAGAGCTGATTTCCTCATATAAAAGTAGCTGCAGACTCTTCGGCTTTTCATTGACTCAGGAAAGTCACATTGCAAATTGCAAATGA 2049 0.4568 MMGLIDLNTTEDDETPSSGSSASLSSHSGISTSASASPSSSSVCLELWHACAGPMISLPKKGSNVVYFPQGHFEQQVQDFSVSAYNIPPHVFCRVVDVKLHAEEGIDEVYCRVSLVPESEQVERKLREGEIDADGEDEDTEAAAKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGVLRLGIRRASQLKCGGTFSVPSGLQLNASTVMDVIHAISTGCAFSVCYNPRVSLSEFVIPFHKFLKSLDQFYSVGMRFRMRFETEDAAERRCTGLVIGISDVDPVRWPGSKWKCLMVRWDDIEATRHNRVSPWEIEPSGSASTPNSFNATGLKRTRIGVPSAKQEFSAPNGIGTSDFGESLRFHKVLQGQEILGANAPFDVISAQSHPLTEIRTCYPGSSCSGIAATGNNIRMSQVNSDVFCNSIGFSESFRFQKVLQGQEILPSQPCGRALSVKEVRGNGRYGIFDSCQLLSSRNGWSPQMQDNSAHLHPSVPSGQVSSPPSVLMFHQAFNPVSNCDYNSLKYQGMEGKVQYGALHASEIKGGKFRSVSSYESNFCGQNQGGTNSVGMFERDQLDTSRSHDSLPSLRGSQELISSYKSSCRLFGFSLTQESHIANCK 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2752 682 MobiDBLite consensus disorder prediction 10 32 - -
Dere02g2752 682 Pfam B3 DNA binding domain 152 253 IPR003340 GO:0003677
Dere02g2752 682 ProSiteProfiles B3 DNA-binding domain profile. 152 254 IPR003340 GO:0003677
Dere02g2752 682 MobiDBLite consensus disorder prediction 1 32 - -
Dere02g2752 682 CDD B3_DNA 150 252 IPR003340 GO:0003677
Dere02g2752 682 Pfam Auxin response factor 279 359 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dere02g2752 682 Gene3D - 315 388 - -
Dere02g2752 682 SUPERFAMILY DNA-binding pseudobarrel domain 146 254 IPR015300 -
Dere02g2752 682 Gene3D - 150 254 IPR015300 -
Dere02g2752 682 FunFam Auxin response factor 315 386 - -
Dere02g2752 682 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 41 676 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere02g2752 682 SMART B3_2 152 254 IPR003340 GO:0003677
Dere02g2752 682 FunFam Auxin response factor 150 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2752 Dere-ChrDere02 31011886 31017116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2752 39 506 B3 DNA Binding Superfamily AT5G60450 49.693 2.73e-144 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere02g2752 B3 8.3e-22 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g2752 02 31011886 31017116 Dere02g2752 02 31011886 31017116 ECH