Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2701 ATGGCGCCGAGAGAGAAGACAGCTGCCGTGAAATCCAACGGTCACGGCGGCGTCAAGGAGGTGCATTTTAGGGGAGTCAGGAAGAGACCGTGGGGGAGATACGCGGCGGAGATTAGGGATCCCGGCAAGAAGAGCCGTGTTTGGCTGGGGACTTTTGATACCGCTGAAGAGGCTGCGCGAGCCTACGACGCGGCTGCACGAGAATTCCGTGGGGCCAAGGCTAAGACCAATTTCCCTACCCCTTCCGAGAATGTGAACCAACAACCCAGCCCGGCTCAGAGCAGTACGGTCGAGTCGTCCAGCCGTGACGGTGAGCCGGCTCACATGGTGGATTCCTCGCCGCTGGACCTCAACTTATCCTCCCACGGCAGAGGATCCGTCAGCAGCTCCGTTCGGTTTCCGTTCCAGCAGCATTTTCCGTCGCCGGCCGCGTTATTTTCCGGCTCTCTTCCGGCGGTGAAACAGGCGTTTTACTTCGATGCGGTGCTACGCGCGAGCATGGCGGCGGGCCATACCTTCCAAGGAATCGTGTTCGATCAGGGCCGTTCGGCGGGAAGTGAATATCGCGCCGGTGGAGTCCAGAGCGACTCCGATTCGTCCACGGTGATCGATCTCAACCTCCGTGATGACGAGAGGCCTCCACGAAAGGAGTTGGATCTCGATCTCAACCAACCTCCTCCGAAGGAAATGGCATGA 696 0.5948 MAPREKTAAVKSNGHGGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTPSENVNQQPSPAQSSTVESSSRDGEPAHMVDSSPLDLNLSSHGRGSVSSSVRFPFQQHFPSPAALFSGSLPAVKQAFYFDAVLRASMAAGHTFQGIVFDQGRSAGSEYRAGGVQSDSDSSTVIDLNLRDDERPPRKELDLDLNQPPPKEMA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2701 231 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Dere02g2701 231 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Dere02g2701 231 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Dere02g2701 231 MobiDBLite consensus disorder prediction 1 20 - -
Dere02g2701 231 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Dere02g2701 231 MobiDBLite consensus disorder prediction 203 223 - -
Dere02g2701 231 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Dere02g2701 231 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Dere02g2701 231 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 190 - -
Dere02g2701 231 MobiDBLite consensus disorder prediction 77 102 - -
Dere02g2701 231 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Dere02g2701 231 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Dere02g2701 231 MobiDBLite consensus disorder prediction 186 231 - -
Dere02g2701 231 MobiDBLite consensus disorder prediction 72 123 - -
Dere02g2701 231 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2701 Dere-ChrDere02 30408135 30408830 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2701 1 227 AP2-EREBP Transcription Factor Family AT5G44210 41.250 1.91e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere02g2701 AP2 3.4e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g2701 02 30408135 30408830 Dere02g2701 02 30408135 30408830 ECH
Dere08g0406 08 6550957 6551589 Dere02g2701 02 30408135 30408830 ECH