Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2696 ATGTCACTACCAGAAACTCCGGCTACTGCCGATGAGGACAGCGACCCATCGATTGAAATATATGGTTCAGACGCTAATGCCAGTGTGTCGGAAGATCCCGAGGAAGAAGAATATGAAGAAGTAGAAGTAGAGGAAGAAATAGAAGAAGAGGAAGGGCAGGAGGTGGAGGTGAAGGACGAATGTGAGGTGTCAGGAACTCCAGTAGATGCCGATAAAGACCCTGAAGACGGGAGCCAACATATAGAGTTGGAGTCTGAGGGGCAAGAGAGGACCTTTAGGCCAGTTTCTTCTGTGGCAGTAAACCCTAATACAGTCTCTGTGGAAAAGAATGACTCATGTAGAAATCTTACAACAAAAAAGGAAGATTTTTACCTGAAACATGTAACTTCAAGCAGTCCAAATTCAAGAAATATTGTGGTTACTGCTGAAGATGATAAACATCAAGGGTTATATGTTGATAATGAGCAAAATGGATCCCGTTGGCAAAGTAAATCCTTCGGAGAAACCAATGAACCAAGTTGTGATAGCAAAACTTACTTATGTGGTGTTAAAGATTCTGGGAGAGCCAAGTTATCCAGTGATACTGGAAAAGATGTGGCTGCTGGCTTCCTGCAGAGAGACTGCTTTCTTGAGGATGCTTATGTCTGCACTCAGAATTCTATGAACCAAATAAAGCAGTTGGAGATGCAGTCAGGGGATGAAATGAAGCAAATGGTATCAAGATTTACTTCCCCTGATATGAGGACTCGAAGTCTTTCTCCCAGTGCTGAGATGAATGATGGAAACAAACGGCCAGCAATCATATGCAATTTTTTTGCTAAAGGATGGTGCATCAGAGGTAATTCATGTAGGTTTCTTCATATAAAAGATCATGTGACTAATTCTGGCCAGCTGGCTGAAGGAGACTTGGTTTCTGCAAATTGGAAGAGAGAAGTGCAATTAGAGGAAGGTCTGGGAGACAGTGCTGAGACATCAAGGATACCTGATGCTCCAGTTACATTGGCTACTTCATTGGTAAGCACGTCCTTGTATTCTTCTGAAAATTGTTTAAAAGAGACCATCCAGGATGAGCAAGAAGCAAGCCCAAGCCAGCATCCACCTCAAGATAAACAGAAGTTTCCACTACTTCCAAAAGAGGATTTATCTTTAATGAACCATGCCTTACCAATTAGTAGAGATAGTTCTACATCAAGGGATAGCTTGTTTCCTGAAAATAGATCTATGTTGAATGCATCAAGCAACTATTTCACCACGAATCTCTCTTCCTATCCACCCTGTGCAGAGGGATTGACTACCATTCAAAGCCAACATATGTACAATAAATATGCCTCCCAAGTTATGAATCATTCACCTAAATCAAGCTTGGTTACTCACATTCCCACTACGAGCATGTTGTTGTCCCACCAAATTTCAGCTCCATCAGGTTATTCGTCATCTTTTAATTCATCTATTGGTGCAACTACTTTGGATGTCCAAAAGGCATTGAACAGTGGCAAAGAATATTGTGCCCCTAGATCCACATTGTTTGGTCCAGAATGGGAAAATTCGCCTCTCTTTAGTTCTTCTGGGGTTCCGGCACTTGCCACTAGATACAGAACAAAAGTCTCTTATGATTGGGAGCCATCTGTACCTTTTCGACCATCTTTTTTTATTACTCCAACTAGTATGTCATCTCCGGGTGATCTGTATGACCCTTTTCATCCTAGTGTTGAGACACTCAATATTGGAGATGGATCCTTGAAAGCTTCCTATTTTATCCAAGGGCCTCCCATCCAGGCTTCATCTCAGGTGCGAACATATGGTGGTGAATATGCTGCACCTAGGGACAAGGTGGCAGATCTTAATGATGACAAGAGTTCTGTATCTTCTCATAATAGATTTTTTGAAAATGAGCCGAACAGGAGTTGTGCTCCTTGTGAAAAGGATTGTCTTGCTCCTGAAACAGAGACAACAGTCAGAACCCATCTAAACTCCCATAATGGTAAAACAAGAATTGGAGACAATACCTTTGGTGTTCAAGATATTACGAAAATAGAAAAAGTACGAACAGAGCATGATGCAAAACATCAAGTTGAAGGATCAGGACACAAAAAGAAAAGAGTAGATAAGGCTAAGATAAACAATGAAATGAATGTTGAGCTTCAGATGGAAGGCGATATACAGAATGATTTGAAGGCTTTAAAAAATTTTCGTGCAGCTCTTGTAGATTTAGTGAAAGAGTTGTTAAAACCATCTTGGCAAGAGGGTCGTCTCAGCAAGGATGCACATAATACAATAGTTAAGAAATCAGTTGACAAGGTTATTAGCACCTTACAGCCCCACCAGATTCCGACCACCATAAATACAGTTAACCACTATGTTTCTTCATCTCGGTTCAAAATCACAAAGCTTGTTGATGTCTTGAAATTCTACCCCCAAACACCTCTGTTGTACAGTTTTGGATCAGTTTGTGAGATCCAGATTCTTGAAAAATTTGTTTTGCTTGCTGATAGGTTTTGCCATTTAGGAGTTCATGAACAGAAAAGAACAGTTTGCGCTTCAGCAGTGCCTGGTTTAATGGCATGGCATTCCTGGCATGGCAATATTAAAAACCTGAAGAATTTCCTGCCAGACGATGCTTTTGTCCCAGTGCTTTTCTTTTAG 2643 0.4101 MSLPETPATADEDSDPSIEIYGSDANASVSEDPEEEEYEEVEVEEEIEEEEGQEVEVKDECEVSGTPVDADKDPEDGSQHIELESEGQERTFRPVSSVAVNPNTVSVEKNDSCRNLTTKKEDFYLKHVTSSSPNSRNIVVTAEDDKHQGLYVDNEQNGSRWQSKSFGETNEPSCDSKTYLCGVKDSGRAKLSSDTGKDVAAGFLQRDCFLEDAYVCTQNSMNQIKQLEMQSGDEMKQMVSRFTSPDMRTRSLSPSAEMNDGNKRPAIICNFFAKGWCIRGNSCRFLHIKDHVTNSGQLAEGDLVSANWKREVQLEEGLGDSAETSRIPDAPVTLATSLVSTSLYSSENCLKETIQDEQEASPSQHPPQDKQKFPLLPKEDLSLMNHALPISRDSSTSRDSLFPENRSMLNASSNYFTTNLSSYPPCAEGLTTIQSQHMYNKYASQVMNHSPKSSLVTHIPTTSMLLSHQISAPSGYSSSFNSSIGATTLDVQKALNSGKEYCAPRSTLFGPEWENSPLFSSSGVPALATRYRTKVSYDWEPSVPFRPSFFITPTSMSSPGDLYDPFHPSVETLNIGDGSLKASYFIQGPPIQASSQVRTYGGEYAAPRDKVADLNDDKSSVSSHNRFFENEPNRSCAPCEKDCLAPETETTVRTHLNSHNGKTRIGDNTFGVQDITKIEKVRTEHDAKHQVEGSGHKKKRVDKAKINNEMNVELQMEGDIQNDLKALKNFRAALVDLVKELLKPSWQEGRLSKDAHNTIVKKSVDKVISTLQPHQIPTTINTVNHYVSSSRFKITKLVDVLKFYPQTPLLYSFGSVCEIQILEKFVLLADRFCHLGVHEQKRTVCASAVPGLMAWHSWHGNIKNLKNFLPDDAFVPVLFF 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2696 880 SMART c3hfinal6 263 289 IPR000571 GO:0046872
Dere02g2696 880 SUPERFAMILY CCCH zinc finger 263 287 IPR036855 GO:0046872
Dere02g2696 880 MobiDBLite consensus disorder prediction 354 373 - -
Dere02g2696 880 MobiDBLite consensus disorder prediction 354 368 - -
Dere02g2696 880 ProSiteProfiles Zinc finger C3H1-type profile. 263 290 IPR000571 GO:0046872
Dere02g2696 880 MobiDBLite consensus disorder prediction 613 632 - -
Dere02g2696 880 MobiDBLite consensus disorder prediction 1 78 - -
Dere02g2696 880 Coils Coil 40 60 - -
Dere02g2696 880 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 27 799 - -
Dere02g2696 880 MobiDBLite consensus disorder prediction 58 78 - -
Dere02g2696 880 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 268 287 IPR000571 GO:0046872
Dere02g2696 880 MobiDBLite consensus disorder prediction 29 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2696 Dere-ChrDere02 30352643 30366543 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere02g2696 zf-CCCH 1.3e-05 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g2696 02 30352643 30366543 Dere02g2696 02 30352643 30366543 ECH