Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2691 ATGCCAGCACAGAAGCGCATGTTTGAGGCGTCAGAAGAGGATGCTCTACACGGTGGGAGGAACCACCGTGAGCAGCCAGAAGATGAATTGGAATCCGATCGAAGCCCTTCGTGGAGCACCGGCGACAAAGAAGAGTTTGTCGTCATAAAATTGTCAGATGTACGCAAGGAAGTTCAATGTCCTATCTGCCTAGGCGTCATTCGAAAGACAAGAACTGTAATGGAATGCCTGCATCGCTTTTGCAGAGAGTGTATAGACAAATCCATGCGCCTTGGCAACAATGAATGCCCTGCTTGCCGCACACATTGTGCTAGCCGACGTTCATTGAGAGATGACCCAAACTATGATGCTTTAATTGCTGCTCTCTATCCAGATATAGACAAGTATGAGCAGGAGGAATTGGCTTTACATGAAGATGAGAAAGCCCGCAATAAGCAGATCCAAGCATCTATTTCTCAGACTATTCAACGACAAGCTGAAGCACTGGGTAAAAAACCAAAAGCCAAAGGCCCTGCACCAACTTTCATGAGGTCACAAGATGTTGCCAGTGATGATAACGTTCCTGAAGGGAGTAGAGAATTCAAAAGTCCATCTGGTACACTTGCCTGGGGAAAAAATGGCCACCGGAGTCACAACCGAGTGAACGTGGTGATCTGGATTCTGCTGGAATATAGACTATCAGAACCTCTGTAG 693 0.469 MPAQKRMFEASEEDALHGGRNHREQPEDELESDRSPSWSTGDKEEFVVIKLSDVRKEVQCPICLGVIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEQEELALHEDEKARNKQIQASISQTIQRQAEALGKKPKAKGPAPTFMRSQDVASDDNVPEGSREFKSPSGTLAWGKNGHRSHNRVNVVIWILLEYRLSEPL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2691 230 PANTHER OS11G0578200 PROTEIN 12 181 IPR044592 -
Dere02g2691 230 SUPERFAMILY RING/U-box 47 131 - -
Dere02g2691 230 CDD RING-HC_RING1-like 57 122 - -
Dere02g2691 230 MobiDBLite consensus disorder prediction 7 40 - -
Dere02g2691 230 Pfam Zinc finger, C3HC4 type (RING finger) 59 99 - -
Dere02g2691 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 130 IPR013083 -
Dere02g2691 230 ProSitePatterns Zinc finger RING-type signature. 76 85 IPR017907 -
Dere02g2691 230 ProSiteProfiles Zinc finger RING-type profile. 60 100 IPR001841 -
Dere02g2691 230 MobiDBLite consensus disorder prediction 162 202 - -
Dere02g2691 230 SMART ring_2 60 99 IPR001841 -
Dere02g2691 230 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2691 Dere-ChrDere02 30326759 30330180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2691 58 168 C3H Transcription Factor Family AT2G30580 30.252 2.68e-07 48.5