Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2689 ATGGTGTTCTTTTCTCCATGTCCTTCTTTCCGGGTCGTTGATTCTCTTGCTCTCATACTAAACTTCCCTGAACTTATGGACAGAAGCACAAGAGAGGGAAAGAGGAGCTTGAAGTACAAGGCGGAGGAGGAGGAGATTGAAGAAGAGGAAGAGGAAGAAGTGAATGAGTATGATACAGGAGACGATGGAAGGAAGAAGATGAGAGATCTGTACAACAAGAGAGGGTCCTCATCAATGGCACCTTCATGTCAAGTTGAAAATTGTGACAGTGATCTGAGTGAAGCTAAGCACTACCATCGCCGCCACAAGGTCTGTGAGTTTCATGCCAAGGCTCCTTCCGTACTCATTGCAGGCTTGCATCAACGTTTTTGCCAGCAATGTAGCAGGTTTCATGAGCTGTCAGAATTTGATGACACGAAAAGGAGTTGTAGAAGGCGTTTGGCTGGACACAACGAGAGGCGTCGAAAGAGTGCAACAAATTATCATGGAGAAGGATTCCATTGA 504 0.4583 MVFFSPCPSFRVVDSLALILNFPELMDRSTREGKRSLKYKAEEEEIEEEEEEEVNEYDTGDDGRKKMRDLYNKRGSSSMAPSCQVENCDSDLSEAKHYHRRHKVCEFHAKAPSVLIAGLHQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSATNYHGEGFH 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2689 167 MobiDBLite consensus disorder prediction 43 57 - -
Dere02g2689 167 FunFam Squamosa promoter-binding-like protein 14 74 144 - -
Dere02g2689 167 ProSiteProfiles Zinc finger SBP-type profile. 80 157 IPR004333 GO:0003677
Dere02g2689 167 Pfam SBP domain 83 156 IPR004333 GO:0003677
Dere02g2689 167 Gene3D - 74 144 IPR036893 GO:0003677|GO:0005634
Dere02g2689 167 Coils Coil 34 59 - -
Dere02g2689 167 MobiDBLite consensus disorder prediction 58 72 - -
Dere02g2689 167 MobiDBLite consensus disorder prediction 31 85 - -
Dere02g2689 167 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 64 158 IPR044817 GO:0003677
Dere02g2689 167 SUPERFAMILY SBT domain 81 161 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2689 Dere-ChrDere02 30312957 30314340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2689 26 160 SBP-box Gene Family AT2G33810 60.000 1.12e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere02g2689 SBP 1.8e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g2689 02 30312957 30314340 Dere02g2689 02 30312957 30314340 ECH
Dere08g0414 08 6626748 6627937 Dere02g2689 02 30312957 30314340 ECH