Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2688 ATGGGTTCCTCTGGTAGGACGACAATGGAAAAACCTTCAGGTCAGGAGCCTCTACAGCAGCAACAACAATCCCTCAAGTGTCCTCGCTGTGATTCATCCAACACCAAGTTCTGCTACTACAACAACTATAGCTTGTCTCAGCCAAGGCACTTCTGCAAATCCTGCAAGCGATACTGGACCAGAGGGGGCACTCTGAGAAATGTTCCTGTGGGTGGTGGATGCAGGAAGAACAAGCGCGTGAAGCGCCCAACCCCTTCTGCTTCTGATCACACTCCTCCTCCTTCTTCTTCTAGTGCTAATTCAAACCTTCCTTCTCAGCCCCACATCGATAATCATGTCAGTCCTCTGTTTTATGGGTTACCCAGAAACTCTAACTGTGACATGAATCTTCCATTTCCAAGGTTCAATTCTGGGTACGATCATCTACAGCCTCATCTGAATGCCATTGGATTGGGTTTTTCTTCTGGGTATGCTTCAAATGATACTCTTCTTTCGAGTTATAATTCCGTCTTCGGTAATTCTACTTCAACTTCTGTGGCTTCCCTGCTAAGCCCTATCAGGGATTTTAATAGGCATCTGCAACTAATACTTGCTTCATCACCGTATTCTGCTTGTGGCATGCAGCACTTGGACTGTGTGTTGTGTCCTATAGTGGGAGGAGGGAACATTGGATTTGCATCTCAGCTTCGCTGA 693 0.4661 MGSSGRTTMEKPSGQEPLQQQQQSLKCPRCDSSNTKFCYYNNYSLSQPRHFCKSCKRYWTRGGTLRNVPVGGGCRKNKRVKRPTPSASDHTPPPSSSSANSNLPSQPHIDNHVSPLFYGLPRNSNCDMNLPFPRFNSGYDHLQPHLNAIGLGFSSGYASNDTLLSSYNSVFGNSTSTSVASLLSPIRDFNRHLQLILASSPYSACGMQHLDCVLCPIVGGGNIGFASQLR 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2688 230 ProSitePatterns Zinc finger Dof-type signature. 27 63 IPR003851 GO:0003677|GO:0006355
Dere02g2688 230 Pfam Dof domain, zinc finger 23 79 IPR003851 GO:0003677|GO:0006355
Dere02g2688 230 MobiDBLite consensus disorder prediction 91 106 - -
Dere02g2688 230 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 138 IPR045174 GO:0003700|GO:0006355
Dere02g2688 230 ProSiteProfiles Zinc finger Dof-type profile. 25 79 IPR003851 GO:0003677|GO:0006355
Dere02g2688 230 MobiDBLite consensus disorder prediction 1 25 - -
Dere02g2688 230 MobiDBLite consensus disorder prediction 70 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2688 Dere-ChrDere02 30288777 30290395 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2688 25 132 C2C2-Dof Transcription Factor Family AT1G28310 65.789 1.45e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere02g2688 zf-Dof 1.3e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g2688 02 30288777 30290395 Dere02g2688 02 30288777 30290395 CCT
Dere02g2688 02 30288777 30290395 Dere02g2688 02 30288777 30290395 ECH