Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2687 ATGAATAATAAGCCTCAACCACAGCAACCCCAGAAATGCCCTCGCTGTGAATCGCTCAACACCAAGTTCTGCTACTACAACAACTATAGCCTCTCGCAGCCTCGTTACTTCTGCAAGGCATGTCGAAGGTACTGGACTCAAGGCGGAACTCTGAGGAACGTCCGCGTCGGCGGAGGCTGCCGTAAGGCCAAGCGCGTCAAAAGCTCTTCCTCTTCCTCGTCTTCCGCTAACTCCGCCCCGTCGTTGCAGCCACCGCAAGAAGCCGAGGTTCAGAAGGACCCTTCTGCCAAGAGTTCTCCTTCTGCTGCGGCGGCGGCAACGGTGGAAGCTGTTCCGTCAATTTACCCCTTCTATCAAGACGCTGCCGGTGGTGATGGTGGGTATTTGTCTTCTCTGGCAGGGATTCAATCCCTGAATCCATCACAGTCGTTCAATCAAATGGGGTCTTGTTCTAATCTGAGTCCTCTTTCTGGGCTCGGTGTTCCCTCTCTGGGCTCACAAATCCGTCCATCGCAACAATTTTATCATATGGGTTTTATCAGTGACAGGGAGGAAGAGCCTCTGTGTGAAGCAGGGCAAGTTTTGATTCAGTCAAGCATGGCTAATACCGGTTCTGCTTCTTCTCACGGCGATTGGACTGATAGCTTCATCATCAATAACGTCAACCATAAGGGATCTGATGCTTCTCTGTGGAGTACTACTGTGAGTACCACTTCCGCTAGAGGTAATTCTCAGAGTAATAATGCTAGTGCTGGTGGGTCATTTTCTTTGATCCCAACTCATCAGTGGCCTGATCTTCCTGAGGACGACCCTCCTCCATGA 822 0.5109 MNNKPQPQQPQKCPRCESLNTKFCYYNNYSLSQPRYFCKACRRYWTQGGTLRNVRVGGGCRKAKRVKSSSSSSSSANSAPSLQPPQEAEVQKDPSAKSSPSAAAAATVEAVPSIYPFYQDAAGGDGGYLSSLAGIQSLNPSQSFNQMGSCSNLSPLSGLGVPSLGSQIRPSQQFYHMGFISDREEEPLCEAGQVLIQSSMANTGSASSHGDWTDSFIINNVNHKGSDASLWSTTVSTTSARGNSQSNNASAGGSFSLIPTHQWPDLPEDDPPP 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2687 273 Pfam Dof domain, zinc finger 9 65 IPR003851 GO:0003677|GO:0006355
Dere02g2687 273 MobiDBLite consensus disorder prediction 235 257 - -
Dere02g2687 273 MobiDBLite consensus disorder prediction 235 273 - -
Dere02g2687 273 MobiDBLite consensus disorder prediction 65 85 - -
Dere02g2687 273 ProSiteProfiles Zinc finger Dof-type profile. 11 65 IPR003851 GO:0003677|GO:0006355
Dere02g2687 273 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 197 IPR045174 GO:0003700|GO:0006355
Dere02g2687 273 ProSitePatterns Zinc finger Dof-type signature. 13 49 IPR003851 GO:0003677|GO:0006355
Dere02g2687 273 MobiDBLite consensus disorder prediction 65 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2687 Dere-ChrDere02 30275782 30276603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2687 1 147 C2C2-Dof Transcription Factor Family AT4G21050 48.000 2.65e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere02g2687 zf-Dof 9.3e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g2687 02 30275782 30276603 Dere02g2687 02 30275782 30276603 CCT
Dere02g2687 02 30275782 30276603 Dere02g2687 02 30275782 30276603 ECH