Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2684 ATGGCTGCATCTTCTGCAGCTCTCAATCCCCTTTGCTCTCTATCCCTTACCACCTACTCGCGTTTCTCTGTCCTCCCTACCTCCAAATTCACCTTCTCTCTCCTCACCAAAACCCCACAACCATTTCTCTCAACCTCCTTATCCCCCTTTATTCCTCTCACCACCACCAAAGCCATATCCTCCGACGACATTGACACATCTTTCTTCGACAATGTGAGCCCAGAAGAAGATGTCGCTTTCAATCCCCCGGAAGTCCCCGAAGGCTTCATTCCCCCTCCCTCCGTCGATGAGGGTCCGATGGAGACCGAAGAGGAAATAGCCGCCGCATATGAGGAGCTCTATGGACCTGCATACAGTGGTTTCAGTGTTCTGGGCAACGATATATATGTAATGGACTCTAAGGTGAAGAAAGATACTGGATTTGGTTCGAAGGCGAAGAAAGAGAAGATCAAGGATGGATTTGAAGAAAGGGTAGTACAAGTGAGAAGGGTGACAAAGGTTGTGAAAGGAGGGAAGCAATTGCACTTCAGGGCCATTGTGGTAGTGGGTGACAAGAAAGGCCAAGTGGGTGTAGGAGTTGGTAAAGCGAAGGAAGTCATTGGAGCCGTTCAGAAATCAGCTGTAAATGCAAGGCGGAATATCATCACGGTGCCTATGACTAAGTATCTGACTTTCCCACATAGATCTGAGGGAGATTATGGAGCAGCAAAGGTAATGCTTAGACCTGCTTCTCCTGGTACTGGAGTTATTGCAGGTGGGTCTGTGAGAATTGTTCTAGAAATGGCAGGCGTTGAGAATGCTTTGGGAAAGCAATTAGGGAGTAATAATGCTCTCAACAATGCGAGAGCAACGGTTGTTGCTGTGCAGAAAATGAGGCACTTACGCGAAGTTGCTCAGGAGCGAGGTATCCCTATGGAAGAACTATGGAAGTAA 933 0.4791 MAASSAALNPLCSLSLTTYSRFSVLPTSKFTFSLLTKTPQPFLSTSLSPFIPLTTTKAISSDDIDTSFFDNVSPEEDVAFNPPEVPEGFIPPPSVDEGPMETEEEIAAAYEELYGPAYSGFSVLGNDIYVMDSKVKKDTGFGSKAKKEKIKDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKGQVGVGVGKAKEVIGAVQKSAVNARRNIITVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGSVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRHLREVAQERGIPMEELWK 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2684 310 Gene3D - 221 309 IPR014721 -
Dere02g2684 310 FunFam 30S ribosomal protein S5 143 215 - -
Dere02g2684 310 ProSitePatterns Ribosomal protein S5 signature. 171 203 IPR018192 -
Dere02g2684 310 SUPERFAMILY Ribosomal protein S5 domain 2-like 224 302 IPR020568 -
Dere02g2684 310 PANTHER RIBOSOMAL S SUBUNIT 144 309 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dere02g2684 310 Pfam Ribosomal protein S5, N-terminal domain 154 218 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dere02g2684 310 Pfam Ribosomal protein S5, C-terminal domain 231 301 IPR005324 GO:0003735|GO:0005840|GO:0006412
Dere02g2684 310 Gene3D - 150 215 - -
Dere02g2684 310 SUPERFAMILY dsRNA-binding domain-like 151 219 - -
Dere02g2684 310 ProSiteProfiles S5 double stranded RNA-binding domain profile. 154 217 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dere02g2684 310 NCBIfam 30S ribosomal protein S5 152 307 IPR005712 GO:0003735|GO:0006412|GO:0015935
Dere02g2684 310 FunFam 30S ribosomal protein S5 219 310 - -
Dere02g2684 310 Hamap 30S ribosomal protein S5 [rpsE]. 131 307 IPR005712 GO:0003735|GO:0006412|GO:0015935
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2684 154 310 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 29.697 1.24e-14 71.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g2684 02 30165500 30167511 Dere02g2684 02 30165500 30167511 ECH