Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2665 ATGGCGAGTTGGTTCGGATCCGCTCCGACGTCCATGATCGTCACCAACACGCCGTCGCAGGACTTAGCTCTCACCAATCTCGCCTTCTGCTCACCCTCTGATCTTCAGAACTTCGCTGTCGCGGGTTACAAAAACATCTTCCTCGCCCTGGTCGGGGACTCCTTCGTCTTCTCTCTTGCATATCCTTTCGAATTTGTAGGAAATTTGGTCCTTTCTTTCTTTCTTGTTTTTTGTTTTTTTTTTTGCAAGTTCGATTGCTTACATACTGCTCACGAAAGCTTACGCAATGGCCACATTGCACTGAATTCGATTCAACGTCGGTGTGTCAAAGTTTCTGCAGCTGAATCGGTGCCTGTAAGCAGATTCGTGCCACCTAACGATTTCAACCTGGCGATGCTAACCCTTGAGTTGGACTTCATAAAGAAGGGAAGTAGAAGTGAACAGATTGATGCAGTTCAGATGGCTAAGCAGCTTAAAAAAAGATTTGTAAACCAGGTTATGACTGCAGGGCAGAAAGTATTGTTTGAATATCATGGAAATAATTATAGTTTTACAGTCAGTCAAGCTGCCGTTGAGGGTCAAGAAAGTTCTAATTCTATTGAGAGAGGGATGCTATCAGATGACACATATGTTGTTTTTGAAACATCACGTGATAGTGGAATAAAGATTGTTAATCAGCGTGAGGCTGCCACAAGTAATATTTTTAAGCAGAAAGAGTTCAATCTTCAGACGCTGGGTATTGGGGGCTTAAGTGCAGAGTTTGCAGATATATTTCGAAGAGCTTTTGCATCTCGTGTTTTCCCTCCCCATGTGACATCCAAATTAGGGATCAAGCATGTGAAGGGCATGCTGCTTTATGGGCCTCCTGGCACTGGAAAAACTCTTATGGCACGTCAAATTGGAAAAATTTTGAATGGGAAGGAACCAAAGATTGTAAATGGCCCTGAAGTCTTGAGTAAATTTGTTGGAGAAACTGAGAAGAATGTCAGGGACCTCTTTGCTGATGCTGAACAAGATCAGAGGCTTCATGGAGATGAAAGCGAATTGCATGTCATAATTTTTGATGAGATTGATGCTATTTGTAAGTCTAGAGGTTCAACTCGAGATGGTACTGGAGTTCATGATAGTATTGTGAACCAACTTCTAACTAAGATAGATGGTGTAGAGTCGCTAAATAATGTTTTGCTTATTGGAATGACCAACAGAAAGGACATGCTTGATGAGGCTCTTTTGAGACCGGGACGACTGGAAGTCCAAGTTGAGATAAGCCTTCCTGATGAAAATGGCCGATTGCAGATTCTCCAAATTCATACTAACAAGATGAAGGATAATTCTTTTCTATCTCCTGATGTGAACCTTCAAGAGCTTGCTGCTCGAACAAAAAACTATAGTGGTGCAGAACTTGAAGGTGTTGTCAAAAGTGCAGTATCATTTGCTTTAAATAGACAGCTTAGTCTTGATGATCTCACGAAGCCAGTGGAGGAAGAGAATATCAAGGTTACAATGGATGATTTTTTGAATGCACTTCAAGAAGTTGTTCCTGCATTTGGAGCTTCAACTGATGACCTTGAAAGATGCAGACTTGGTGGCATGGTTGACTGTGGTGATCGACATAAGCACATTTATCAAAGAGCTATGCTACTTGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCACTTGTTACCTGTCTTCTGGAAGGCCCTAGCGGCAGTGGTAAAACTGCACTTGCTGCTACTGTTGGCATTGACAGTGATTTCCCATATGTCAAGATTGTTTCAGCTGAATCAATGATTGGTTTGCATGAAAGCACTAAATGTGCACAGATTATCAAGGTTTTTGAGGATGCATACAAGTCACCATTGAGCGTCATTATTCTTGATGACATTGAGAGATTACTGGAGTATGTGGCCATTGGTCCACGGTTTTCAAATTTGATTTCTCAGACACTATTAGTCCTGCTAAAACGGCTTCCTCCAAAGGGAAAAAAGCTCTTGGTTATTGGTACTGCAAGTCAATTGATTTTCCTGGACTCAATTGGTTTTTGTGATACTTTCTCTGTCACTTACCATGTTCCTACATTAAACACAAACGATGTGAAGAAGGTCCTAATGCAGTTGAATGTTTTTGCTGAGGATGATGTTGATGCTGCAGCAGAGGCCTTGAATGATATGCCTATCAAGAAGCTATACCAGTTGATTGAGATGGCAGCCCAAGGTGAACAAGGTGGATCCGCAGAAGCAGTCTATTCTGGCAAAGAGAAGATCAAGATCTCTCACTTCTATGATTGCCTCCAGGATGTTGTCCGAATATAA 2313 0.4185 MASWFGSAPTSMIVTNTPSQDLALTNLAFCSPSDLQNFAVAGYKNIFLALVGDSFVFSLAYPFEFVGNLVLSFFLVFCFFFCKFDCLHTAHESLRNGHIALNSIQRRCVKVSAAESVPVSRFVPPNDFNLAMLTLELDFIKKGSRSEQIDAVQMAKQLKKRFVNQVMTAGQKVLFEYHGNNYSFTVSQAAVEGQESSNSIERGMLSDDTYVVFETSRDSGIKIVNQREAATSNIFKQKEFNLQTLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRLHGDESELHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKDNSFLSPDVNLQELAARTKNYSGAELEGVVKSAVSFALNRQLSLDDLTKPVEEENIKVTMDDFLNALQEVVPAFGASTDDLERCRLGGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATVGIDSDFPYVKIVSAESMIGLHESTKCAQIIKVFEDAYKSPLSVIILDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKGKKLLVIGTASQLIFLDSIGFCDTFSVTYHVPTLNTNDVKKVLMQLNVFAEDDVDAAAEALNDMPIKKLYQLIEMAAQGEQGGSAEAVYSGKEKIKISHFYDCLQDVVRI 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2665 770 Gene3D - 232 424 IPR027417 -
Dere02g2665 770 FunFam Vesicle-fusing ATPase 425 512 - -
Dere02g2665 770 SUPERFAMILY ADC-like 8 61 IPR009010 -
Dere02g2665 770 Gene3D - 522 692 IPR027417 -
Dere02g2665 770 Pfam Cell division protein 48 (CDC48), domain 2 148 193 IPR004201 -
Dere02g2665 770 Gene3D - 125 223 - -
Dere02g2665 770 SUPERFAMILY Cdc48 domain 2-like 124 228 IPR029067 -
Dere02g2665 770 Pfam ATPase family associated with various cellular activities (AAA) 564 672 IPR003959 GO:0005524|GO:0016887
Dere02g2665 770 Pfam ATPase family associated with various cellular activities (AAA) 283 423 IPR003959 GO:0005524|GO:0016887
Dere02g2665 770 FunFam vesicle-fusing ATPase isoform X1 521 692 - -
Dere02g2665 770 PANTHER VESICULAR-FUSION PROTEIN NSF 10 769 IPR039812 GO:0016887|GO:0035494
Dere02g2665 770 Pfam AAA+ lid domain 450 505 IPR041569 -
Dere02g2665 770 CDD RecA-like_NSF-SEC18_r1-like 246 422 - -
Dere02g2665 770 FunFam Vesicle-fusing ATPase 126 223 - -
Dere02g2665 770 FunFam Vesicular-fusion ATPase SEC18 235 425 - -
Dere02g2665 770 Gene3D - 425 512 - -
Dere02g2665 770 ProSitePatterns AAA-protein family signature. 394 412 IPR003960 GO:0005524|GO:0016887
Dere02g2665 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 523 738 IPR027417 -
Dere02g2665 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 522 IPR027417 -
Dere02g2665 770 SMART AAA_5 279 426 IPR003593 GO:0016887
Dere02g2665 770 SMART AAA_5 559 680 IPR003593 GO:0016887
Dere02g2665 770 Gene3D - 7 122 - -
Dere02g2665 770 SMART CDC48_2_2 148 211 IPR004201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2665 Dere-ChrDere02 29884813 29895059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2665 184 498 Calmodulin-binding Proteins AT3G56690 30.284 2.74e-30 126