Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2654 ATGGCTAAAAATTTGTTGGAGCTCAACCACCATCTGGCTTCAGCCGCCATCTCCGGCGGTGGAGGTGGCTCTCCGAGGGCACGGTACGTGGCACCGTTTCTGTTGAAGACGTATGGTTTGGTAGAAGAAGGTGGGGTGGGAGATGACGACGAGGAAGAAGAAGACGATAATGATGATGACAATAACGATGATAATGGTAACGACAAGAAGAAAGTAGTGTCATGGAATGTGGAAGGAGATGGTTTTGTTGTGTGGCGTCCTGCTGAATTCTCAGAGCTCATCTTGCCCAGATATTTCAAGCACAATAATTTCTCCAGCTTCATCCGTCAACTGAATACCTATGGATTCAAAAAAGTATCATCAAAAAGATGGGAATTCAAGCACGAGAAATTTCAAAGAGGCTGCAAAAATCTGCTAGTGGAAATCACTAGGAAGAAGTGCGAGCCAAGCATTTTCCCTTCATACTTGAAGTCATCTTCAGAAGAAAATGCAGTGAGCTTTACAGAAGAAAGCAATCATCAATTACTCCTGAAAGAGAACATTAACCTAAAGAAGGAGAGGTTGGAACTGCAGACACAGATTGCCCACTTCAAAGCACTAGAAATGAAGTTGATGGAGTGTGTGTCTCAGTATATGAGTGACCACCAAAATAAAGGCAAATCATTTCCAGTACTAGTTTACTCTGAAAAAACCCTAGCCATGGAGTCGAAGCTCTTTCGCAGGATCGCAATGCAAAGTGCGATCGCGAGCAGATTTTACTACACGAGCAGGACCAAAAAAACAACTCTCTATAATAAAATCAGTCCTCTTGGGAACACTAGCTTAGTTTCTGAGCTCGAAGATTGGGTCTACAAGGGCAACAAGATCCGCGTCGCCGAGCTTCAGCGCATCATTCGAGATCTTCGCAAGCGCAGGAGGTTCACCCAAGCCCTAGAGGTATCTGAGTGGATGAATAAGAATGGAGTATGCATATTTTCACCCACTGAACATGCGGTGCATTTGGATCTGATGGGCAAAGTTCATGGATATCCTTCTGCTGAAAGCTATTTTAATAGCTTGAAGGAACAAGATAAAAATGACAAGACATATGGTGCTCTTTTGAATTGCTATGCTCGGCAGCGCCAAACTGACAAGGCCCTCTCCCATCTGCAGAAAATGAAGCAGTTGGGATTTGCTTCATCACCTCTAACTTACAATGATATTATGTGTCTATACACAAATATTGGTCAGCATGAGAAGGTCCCTGATGTGCTAATTGAGATGCAAAAGAACAAAGTTTTGCCTGACAACTTCTCCTACAGAATCTGTATCAATTCATGTGGGGTGAGGTCTAATATTGATGGAATGGAAAAGACATTAAAAGAGATGGAAAACCAATCTCACATTGTCATGGACTGGAACACTTATGCTGTCGTGGCTAATTTCTATATAAAAGCAGGACTCACAAGTAAGGCAGTTGATGCCCTAAAGAAATCAGAGGAGAGGCTAGATAAGAAAGATGGCCTAGGTTACAATTTTCTTATCTCCCTCTATGCCCGTCTTGGGGAAAAGACTGAGGTCATTAGATTATGGGAACTAGAGAAGAGTGACTGCAAGAGGTGTTTAAACAGGGATTTCACCAACATGTTAGAATCTTTGGTAAGGCTTGGTGAGTTTGAAGAAGCTGAGAAAGTACTGAAGGAGTGGGAGTCCTCTGGCAATTGTTATGATTCACGAATCCCAGATACTGTCATCAATGGGTACTCTGAAAAAGGTTTGCATGAGAAAGCGGAAGCCATGCTTAAAAGCTTACAGAAGAGGGGAAAGGCCACCATGCCCAACAGTTGGACTGTAGTGGCAGGTGGATACCTGCGTAAGGGTGAGATGGAGAAGGCAGTGGAGTGCTTAAAAGCAGCCCTCCATGTGGAAAATAAAGGATGGAAGCCTAATCCCAGGGTGATCGCAGGCATAATGAGTTGGCTTGGTGATAACGGTAGTGTTGAAGATGTGGAAGCTATGGTGAGCTCATTAAGAAATGTCGTCCCTGTAAACGAAAGAATGTATGATGCCCTCATTAAGACTTACGTAAGACATGGCAAAGAAGTGGATGGGCTCTTGGATCGCATGAAGAAAGATAACATTGTTCACGATGAGAAAACAAAAGAAATTCTTGAATGA 2157 0.4321 MAKNLLELNHHLASAAISGGGGGSPRARYVAPFLLKTYGLVEEGGVGDDDEEEEDDNDDDNNDDNGNDKKKVVSWNVEGDGFVVWRPAEFSELILPRYFKHNNFSSFIRQLNTYGFKKVSSKRWEFKHEKFQRGCKNLLVEITRKKCEPSIFPSYLKSSSEENAVSFTEESNHQLLLKENINLKKERLELQTQIAHFKALEMKLMECVSQYMSDHQNKGKSFPVLVYSEKTLAMESKLFRRIAMQSAIASRFYYTSRTKKTTLYNKISPLGNTSLVSELEDWVYKGNKIRVAELQRIIRDLRKRRRFTQALEVSEWMNKNGVCIFSPTEHAVHLDLMGKVHGYPSAESYFNSLKEQDKNDKTYGALLNCYARQRQTDKALSHLQKMKQLGFASSPLTYNDIMCLYTNIGQHEKVPDVLIEMQKNKVLPDNFSYRICINSCGVRSNIDGMEKTLKEMENQSHIVMDWNTYAVVANFYIKAGLTSKAVDALKKSEERLDKKDGLGYNFLISLYARLGEKTEVIRLWELEKSDCKRCLNRDFTNMLESLVRLGEFEEAEKVLKEWESSGNCYDSRIPDTVINGYSEKGLHEKAEAMLKSLQKRGKATMPNSWTVVAGGYLRKGEMEKAVECLKAALHVENKGWKPNPRVIAGIMSWLGDNGSVEDVEAMVSSLRNVVPVNERMYDALIKTYVRHGKEVDGLLDRMKKDNIVHDEKTKEILE 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2654 718 PANTHER OS12G0527900 PROTEIN 232 709 - -
Dere02g2654 718 MobiDBLite consensus disorder prediction 44 62 - -
Dere02g2654 718 Gene3D Tetratricopeptide repeat domain 635 717 IPR011990 GO:0005515
Dere02g2654 718 PRINTS Heat shock factor (HSF) domain signature 107 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere02g2654 718 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere02g2654 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Dere02g2654 718 FunFam Pentatricopeptide repeat-containing protein mitochondrial 291 502 - -
Dere02g2654 718 Gene3D - 26 146 IPR036388 -
Dere02g2654 718 Pfam PPR repeat 362 391 IPR002885 -
Dere02g2654 718 Pfam PPR repeat 576 601 IPR002885 -
Dere02g2654 718 Pfam PPR repeat 608 630 IPR002885 -
Dere02g2654 718 Pfam PPR repeat 539 566 IPR002885 -
Dere02g2654 718 SUPERFAMILY TPR-like 468 636 IPR011990 GO:0005515
Dere02g2654 718 Pfam HSF-type DNA-binding 64 145 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere02g2654 718 Coils Coil 291 311 - -
Dere02g2654 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Dere02g2654 718 Gene3D Tetratricopeptide repeat domain 478 634 IPR011990 GO:0005515
Dere02g2654 718 Gene3D Tetratricopeptide repeat domain 291 477 IPR011990 GO:0005515
Dere02g2654 718 SMART hsfneu3 29 145 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere02g2654 718 SUPERFAMILY TPR-like 341 641 IPR011990 GO:0005515
Dere02g2654 718 ProSitePatterns HSF-type DNA-binding domain signature. 95 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere02g2654 718 MobiDBLite consensus disorder prediction 44 71 - -
Dere02g2654 718 NCBIfam pentatricopeptide repeat 362 391 IPR002885 -
Dere02g2654 718 NCBIfam pentatricopeptide repeat 397 429 IPR002885 -
Dere02g2654 718 NCBIfam pentatricopeptide repeat 539 570 IPR002885 -
Dere02g2654 718 FunFam Heat stress transcription factor A-6b 26 146 - -
Dere02g2654 718 Pfam PPR repeat family 397 440 IPR002885 -
Dere02g2654 718 SUPERFAMILY "Winged helix" DNA-binding domain 67 145 IPR036390 -
Dere02g2654 718 Coils Coil 173 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2654 Dere-ChrDere02 29758913 29764268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2654 262 705 EF-hand Containing Proteins AT1G02150 34.430 1.31e-85 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dere02g2654 HSF_DNA-bind 1.2e-27 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g2654 02 29758913 29764268 Dere02g2654 02 29758913 29764268 ECH