Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2644 ATGTCTGACACCGAAAATCACGCCTCTTATAAGCTTGGCGATCGTCGTGTTTCATCGCCTGGTAGTGGCTACCGCGACAAGTCCAATTCTCGTGGATCTGATCATGAGAGGCTTAGGGTGAACAAGCGAGATGAGGAGAGGAAAATTTTTCATGAGCAACATCACCGGGACTATAAGGATGGAGGCTTTAGAGGAAGGGACAAGTATGATAATTACCGTCGTCATCAGAACCGTGGTTATGACAGGCATCGAGGCCATGTTCGACATGGAGAAATTAGGCACAATTATGGAACACAATCAAGTTACAGATCCAAGAGGAAATCTAGATCTCGTTCAAGATCCCCATCTCATTCAGAAAGCAAAAGGACCAGTGGTTTTGACATGGCACCGCCTGCTGTTGCTGTAATACCTGCTGTTTCAGGCAATGTTGGGCTGCATGTCCTATCGACCTACCTTTCAGCATACACCCTGTATGATATATTTTCTTTCATTTTGGCTTCATTTGCTGTGATGAGATTCGTGCTTTTAGGCCCTGTTTGGCAAATGCTGGGGATTACTCATCCAGGAACTGTGCAAAATTTGCCGCCAGTTGGGATGTCACAGCTTGGAGCACTTTCCTTAATTTCAGTTCAACCTATGATGCAGCAGGCTACAAGGCATGCACGGAGAGTTTATGTTGGTGGGCTCCCCCCTATGGCTAATGAGCAGGAAATTGCGGCATTCTTCAGTCATGTTATGACTGCTATTGGGGGGAATTCTGCTGGTGCAGGTGATTCTGTTGTCAATGTCTATATTAATCATGAGAAGAAATTTGCATTTGTGGAGATGAGAACTGTTGAAGAAGCTAGTAATGCAATGGCACTAGATGGAATAATATTTGAGGGTGTTGCTGTGCGGGTTCGTAGACCTACAGATTATAATCCTTCATTAGCTGCAGCTCTTGGTCCAAGCCAACCAAGTCCAAACCTGAACTTATCTGCTGTTGGGCTTGTTGCAGGTGCAATTTGTGGAACTGAGGGACCTGACCGCATTTTTGTGGGTGGATTACCATACTACTTTACTGAAGAACAAATAAAGGAATTGCTCCAAGCTTTTGGACCTCTCAGAGCTTTTGATCTAGTTAGAGATAAAGACACTGGAAATTCTAAAGGATATGGTTTCTGCATCTATCAGGATACAGCTGTAACGGACATTGCTTGTGCCTCTCTTAATGGCCTTAAAATGGGTGACAAAACACTGACTGTTCGGCGTGCCACAGTCAGTGTACAGTCTAAACCAGAACAGGAGCATATCTTTGCTCGGGCACAACAGCATATAGCCATGCAGAAAATAGCCTTGGAAGTTGGTGGGTTGAATATTCCTGCAGTGGAAAGAGCACCGGCAATGCATAATGAAAGTGCCACTAAAGTTTTATGCTTAACTGAGGCTATTACTGCTGATCAACTGAGGGATGATGAGGAGTATCAAGAAATATTGGCAGACATGCATGATGAATGCCGCAAATTTGGGACCTTGATAAATGTTGTTATTCCTCGTCCAACTTGCATTGGAGAGACTGCACCAGGTGTTGGAAAGGTGTTCTTGGAATATTCTGATAGTACTGGTTGTTTCACTGCCAAAAATGCCCTAAATGGGAGGAAATTCGGAGGCAATGTTGTGAATGCCTTTTATTATTCCGAAGAAAAATATCATAGCATGGATTATGATGTGTAA 1713 0.4384 MSDTENHASYKLGDRRVSSPGSGYRDKSNSRGSDHERLRVNKRDEERKIFHEQHHRDYKDGGFRGRDKYDNYRRHQNRGYDRHRGHVRHGEIRHNYGTQSSYRSKRKSRSRSRSPSHSESKRTSGFDMAPPAVAVIPAVSGNVGLHVLSTYLSAYTLYDIFSFILASFAVMRFVLLGPVWQMLGITHPGTVQNLPPVGMSQLGALSLISVQPMMQQATRHARRVYVGGLPPMANEQEIAAFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPSLAAALGPSQPSPNLNLSAVGLVAGAICGTEGPDRIFVGGLPYYFTEEQIKELLQAFGPLRAFDLVRDKDTGNSKGYGFCIYQDTAVTDIACASLNGLKMGDKTLTVRRATVSVQSKPEQEHIFARAQQHIAMQKIALEVGGLNIPAVERAPAMHNESATKVLCLTEAITADQLRDDEEYQEILADMHDECRKFGTLINVVIPRPTCIGETAPGVGKVFLEYSDSTGCFTAKNALNGRKFGGNVVNAFYYSEEKYHSMDYDV 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2644 570 FunFam U2 snRNP auxiliary factor large subunit 319 431 - -
Dere02g2644 570 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 24 568 IPR006529 GO:0003723|GO:0005634|GO:0006397
Dere02g2644 570 SUPERFAMILY RNA-binding domain, RBD 343 561 IPR035979 GO:0003676
Dere02g2644 570 SUPERFAMILY RNA-binding domain, RBD 222 307 IPR035979 GO:0003676
Dere02g2644 570 Gene3D - 464 569 IPR012677 -
Dere02g2644 570 PANTHER RNA-BINDING PROTEIN 15 568 - -
Dere02g2644 570 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 344 413 IPR000504 GO:0003723
Dere02g2644 570 MobiDBLite consensus disorder prediction 1 127 - -
Dere02g2644 570 FunFam U2 snRNP auxiliary factor large subunit 465 569 - -
Dere02g2644 570 Gene3D - 217 318 IPR012677 -
Dere02g2644 570 CDD RRM1_U2AF65 221 303 - -
Dere02g2644 570 MobiDBLite consensus disorder prediction 28 77 - -
Dere02g2644 570 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 222 305 IPR000504 GO:0003723
Dere02g2644 570 CDD RRM2_U2AF65 342 418 - -
Dere02g2644 570 SMART rrm1_1 343 416 IPR000504 GO:0003723
Dere02g2644 570 SMART rrm1_1 223 301 IPR000504 GO:0003723
Dere02g2644 570 SMART rrm1_1 476 556 IPR000504 GO:0003723
Dere02g2644 570 Gene3D - 337 438 IPR012677 -
Dere02g2644 570 FunFam U2 snRNP auxiliary factor large subunit 217 318 - -
Dere02g2644 570 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 342 420 IPR000504 GO:0003723
Dere02g2644 570 CDD RRM3_U2AF65 468 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2644 Dere-ChrDere02 29606033 29615885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2644 344 434 Eukaryotic Initiation Factors Gene Family AT1G22760 30.769 1.40e-06 49.3