Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2608 ATGGGACGGAAAACGGAAGAACAGATGCAAACAAGAGTAGAGGGTCTTGAGCAGTCTAAAATGACCAAGATTGGAGATATTATCTCGTTAAAAAAGAAAGAGGAAAATGATGGAGCAATATGGAGGAAGGAGGAGGATGACTTTGTAGGAGCCAGCAAGAGACGTTGGCACGAAGGATTCGTGCTTTCAAATGCACAAACCTTTCATGTTGATGGTGCTATTTTTCCTTCAGAGATGAAGAATAGCTTTGGAATATTCTTTTGCAATGAATCAAGAAACTCTACCCAAACCATCTCAGGTTGCCTTAGTGGAATCTTTAATGCAATAGCTACAAAAGCTATTGGCTTAAGATTTGCTTTATCTTGGGCAACTGAACATCTAAATTCGAAAGACACTTTTTTCTCAAATTCAATGAACATAATAACAACTATATACTCGAATGAAATTGATAACTCTGAACTTGGGACACTTATCCAAGACTGTAGAGATATCCTAGTTAATCATAACCCTTTCTCCTATTCTTGGATCAGTAGAGAAGCCAATAAAGAGGCTCATAATCTTACTAGGTCATCCTCGGATGATTATCAAGACAGTGAATTCAAAAGTGATGACAATCGCTTTCATAAGTTGTCAATCGAAAGATTGGTGAGCGTGGTGGCGGTAGATATGGATAGCACCGATTCATCTTCAGGTTCTCAGCATCCTCAGCTCCCTCCTGGCTTTCGCTTCCACCCCACCGACGAGGAGCTCGTCGTCCACTACCTTAAGCGAAAAGCAGCCTCCGCTCCTCTTCCCGTCGCCATCATCGCTGACGTCGATCTCTACAAGTTCGACCCATGGGAGCTCCCAAGTAAAGCAGCGTTTGGGGAGCATGAGTGGTATTTCTTCAGTCCAAGGGATCGGAAGTACCCAAATGGGGCGAGGCCAAACAGGGCAGCTACTTCAGGGTATTGGAAAGCTACTGGAACGGACAAGCCTATATTGTCATCTGATGGGCGAAACCAGAAAGTAGGGGTAAAGAAGGCTCTGGTTTTCTATGGTGGGAAGCCTCCAAAAGGGGTTAAAACCAATTGGATCATGCACGAGTATAGGCTCACTGACAATAATTCCTATAATAATTCTACCTTTAAACCTCCTCTTGTTTCTGACCCTGCATCACACACTACCAAGAAGAACTCCTTAAGGCTTGACAATTGGGTTTTGTGCCGAATATACAAGAAATCCAACAGTAATATCAGTACTACTCTGCAGAGGCCAACATTGATGGAGCAGGACAAGGAGCTGTCTATGGAGGCTATGCTTCCCACAATCTCAACTTTGTCAATGGCTAATACTGCTAATAATGCCCAGCAGAATTCCAATCCTCCATTAGGACTTGATAATGAAGACAACTTCTTTGATGGAATATTAGGTGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGCCGATTCTCATGATTATCATCACTTGGTTTCTTCAAACACGTCCAAGGGAAGTAGCTTCCCTCATATGAAACGACCCCTACCATCGCCTTTTTGGAACGAGACAGGGTCTCCATCAGGGTCGTCTTCTTCAAGCAAGAGGTTCCATGGTGATCTTAACATTACTGGAATTAGCACTACATCTGAGGAAAACAGTTCCTTTGTTTCTCTGCTAAGCCAGCTGCCTCCCCAGAGTACGACGACGTTTCATCACCCTAATGCCCTTCTCGGGTCTGTTAATGATGGTGTTTTGAGGCAGCAATTTCAACTCCCAACCCTAAACTGGAACTCATAG 1782 0.4405 MGRKTEEQMQTRVEGLEQSKMTKIGDIISLKKKEENDGAIWRKEEDDFVGASKRRWHEGFVLSNAQTFHVDGAIFPSEMKNSFGIFFCNESRNSTQTISGCLSGIFNAIATKAIGLRFALSWATEHLNSKDTFFSNSMNIITTIYSNEIDNSELGTLIQDCRDILVNHNPFSYSWISREANKEAHNLTRSSSDDYQDSEFKSDDNRFHKLSIERLVSVVAVDMDSTDSSSGSQHPQLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIADVDLYKFDPWELPSKAAFGEHEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILSSDGRNQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLTDNNSYNNSTFKPPLVSDPASHTTKKNSLRLDNWVLCRIYKKSNSNISTTLQRPTLMEQDKELSMEAMLPTISTLSMANTANNAQQNSNPPLGLDNEDNFFDGILGGGGGGGGGGGGGADSHDYHHLVSSNTSKGSSFPHMKRPLPSPFWNETGSPSGSSSSSKRFHGDLNITGISTTSEENSSFVSLLSQLPPQSTTTFHHPNALLGSVNDGVLRQQFQLPTLNWNS 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2608 593 PANTHER NAC TRANSCRIPTION FACTOR 56 237 441 - -
Dere02g2608 593 Pfam Reverse transcriptase-like 84 189 IPR002156 GO:0003676|GO:0004523
Dere02g2608 593 MobiDBLite consensus disorder prediction 495 533 - -
Dere02g2608 593 Gene3D - 66 198 IPR036397 GO:0003676
Dere02g2608 593 FunFam NAC transcription factor 56 246 412 - -
Dere02g2608 593 MobiDBLite consensus disorder prediction 515 533 - -
Dere02g2608 593 Gene3D NAC domain 246 412 IPR036093 GO:0003677|GO:0006355
Dere02g2608 593 ProSiteProfiles NAC domain profile. 237 407 IPR003441 GO:0003677|GO:0006355
Dere02g2608 593 SUPERFAMILY NAC domain 231 407 IPR036093 GO:0003677|GO:0006355
Dere02g2608 593 CDD RNase_H_like 70 189 IPR044730 -
Dere02g2608 593 Pfam No apical meristem (NAM) protein 238 365 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2608 Dere-ChrDere02 28972095 28982911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2608 227 593 NAC Transcription Factor Family AT1G61110 54.090 2.74e-108 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere02g2608 NAM 1.2e-39 No_clan