Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2599 ATGGCGGACGAGGGGTTCGATTACTCGGAACTGGTTGACGCAGACGCTGATGCTGATGATAATTTGTTTATAGATCTTGACACCGTTTTGAATGTTCTTGATGAGGATTGCGATCCTTCGGAGAGTAGTCCCGAGGGCTCTTCATTAAAAAATGTCTCACCTGGAGAATCAGGTATCCATGATAATTTTCAGCTTGCAAACGGAAATTCTGTACTTTATTCTGATCATGAAAATCAAGGACCTACTTCTCAGACTTGCTCTTCCTCACATGCTATCCCTGGCAGTTGCCAGCAATTAGATCCTCTGGATGAAAGTAATGAAATTTGCTACACAGAAAGGGGAGGAGTTTCAGGATGTGAGATACCTGTTCATACTGTGGAACCTAGTTTCCCTGAGACACATTTCAAAAATATATCAGTTTGTGGAGATAATTTGAACTTGAATCCTCTCTGGAAGGGAGAAAATGAGAGCCAGTTAAAGCATGTGGGAGAGGATGTTAAATCTGAATATGCTTCATACAGCCCTATCACTGAGAATGGTGATGTAAATTTTGCACATTATGGAGCTCTTGATGAAGATATGCTTGAAGGAGCTTCTGGGCAACATGAAACTGACTCATGTACATCTTTTGAAGTATCGTTCATGGATGCTAGTAGAGGTTCACATATTGCAACGTCAACTAATTCTACCATTTGCCAAGGTTCCAATGTTCCTAGTGATTATAGTGACTACATTTCATCCTTGCATAGTTGTAGGGGTGTAGATGAGAGACCTTTAGTTTCTGACTCGCCTCTTGGTTGTTTGCCTAATGTTTTTGGCTCTCAATTTTGGCCAAATCAAGAAATGATGAAAAATGTGAAGGCTGAAAATGTGGAATGTTTAACTGATACCTCACGTGTGAGTAGTAACTTGTATTCCACTTCTACTGGTGGGATTCCTTTTCAAGATAATCGATTTATGTCGGCAGATAGTGAATTTTCTTCATTTTTTCCTGGTAATGCTTCACATGTGCCAAGCGAAGACCAAGTAATTTGTGTCAAAGGTGAAAGGGAACTGATTGCACGGTACCAGAGCTCTCCTTACAATGATTATAATGAGTTTAGTGTTGGCCAAGAGATGAGTCAATTACCTCATGCTTTTCCTTCCACTGGATGTCATAGTTATAATTTGTTGAAGTGTGAGGACAAAGCTACAGATATATTTTCTGACATACCTCATCATTTTCAAGAGATGTTTGATGGTACTGATTGTAAATTTCCAAGAGACACAGCTGATTTGAATTTACAAGCCTTAGACAAATCTTTGCCCCATGTCCAGGCCTCAATTGCTAGTGAGAAGCAGTTTTCTTGTTTTAAGAGTGAAGGAGAGGGAAATATGATTCAATGTAGAAGTCTTGATTCTCATATTTCAAAACCAAGCACTGAATTGGTTCAGAGAGATTTCTTGGAGCATTCTCGTGTTGAGGATGATGACTCTGATATCTACATTATTGAAAGCATCAGTCATCCAGCACCGACAAGTCAGTCAGCACACCTTGGGAATTCTCAGAATGCATTACAGCATTCTGCGTATGGTGATTCACAATCTTACATGTCGCGAGGCGCAAGGATGAGGGCATGTGATGAGCAATATATATTACGAGTTGCCCTTCAGGATTTATCTCAACCAAAGTCAGAAGTTATACCTCCAGATGGATTGATGGCTGTTCCTCTATTAAGACATCAGAGAATAGCTTTGTCATGGATGGTTCAAAAGGAAACATCAAGTTTATACTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTAGGAAAAACGGTGTCAACTATTGCTTTGATACTAAAGGAGAGACCTTCAGCTCTTATAGCTTGTCATCGTGCACAAAAGGGTGAATTAGAAACTTTGAACCTGGATGCGGATGATGATGGTCTTGCTGAGAATGGTGGACTGAAGAAAGATGCTAATATGTGTCAAGATATGTCAAGTATATGTCCAATCAAAGACAATAATTTGTTGATACAAACAAAGGGAAGGCCATCTGCTGGAACACTTATTGTTTGTCCCACTAGTGTCCTACGGCAATGGGCTGAAGAGTTGCAAAATAAGGTTACCAGCAAAGCAAATCTCTCTGTGCTAGTGTACCATGGAAGCAATCGAACCAAAGATCCTTATGAGCTGGCCAAGTATGATGTTGTTCTGACCACTTATTCAATTGTCAGCATGGAGGTACCTAAGCAGCCTCTGGTTGACAAAGATGATGAAGAGAAAAGAAATTCTGAAGTTCATGCTGATCTACCACCTAGTAAGAAACGGAAATGTCCTTCTAGTAAAAGTGGCAAGAAGGGATTAGACAGTGCATTGCTTGAGGTTTCTGCTCGTCCTCTAGCAAAGGTGGCATGGTTTAGGGTTGTCTTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCGAAGCGTAGATGGTGCTTGTCAGGGACTCCAATTCAGAATGCAATTGATGATCTTTACAGTTACTTCAGATTTCTTAGATATGACCCTTATGCAGTCTATACAACATTCTGTTCTACAATTAAGATTCCAATCAACAGAAATCCAAGCAAGGGGTACAAAAAGCTACAAGCTGTCTTAAAGACAATAATGTTACGCCGGACAAAAGGCACTCTTCTTGATGGGGAACCTATTATTACCTTGCCACCTAAATTGGTAAAGCTGAAAAAGGTGGATTTTTCAAGGGAGGAGCGAGATTTTTATTCTAGACTGGAGGCTGATTCTCGTGCACAGTTTCAGGAATATGCTGCAGCTGGGACTGTGAAGGAAAATTATGTCAACATTTTGTTAATGCTTTTGCGCCTTCGACAAGCTTGTGATCATCCTCTGCTTGTTAAGCGCTACAATTCTAATTCTCTATGGAGATCTTCAGTTGAGATGGCAAAGAAACTTCCTCGGGAAAAACAAATATCACTTCTGAAATGTTTAGAGGCTTCCTTGGCTCTCTGTGGCATCTGTAACGATCCTCCTGAAGATGCTGTTGTTTCAGCTTGTGGTCACGTTTTCTGTAACCAGTGCATTTGTGAACATCTTACTGGTGATGATAATCAGTGCCCTGCTACAACTTGCAAAGCTCAGTTGAGCATGTCTTCTGTGTTTTCCAAAACCACGTTGAGCTGTTCTCTTTCTGGCCAGGCCAGTGATAGTTTGCTTGGTTGCTCTGGTTCAGAAGTCGAGGGATATGAGCCTTGTTCTCAGAGTCAGCCATGTGATTCTTCAAAAATTAAGGCTGCTCTTGAGGTGTTGACTTCATTATGTAAACCACAGGATAATGCATCAAAAAATATATCTATGCACATTAATTCTGAGGAAGACAGTGACTGCCCTGCGAATGTCTCTGATGCTAATAAGGCAAAATCCTTCAAGGAATTTCCAGAGAGTCAAAAAATGTCTGAGGCTGGAAGATCTAATGATTCAGTTGTAAGAGAGAAAGCTATTGTGTTTTCTCAGTGGACAAGGATGTTAGATTTGCTTGAAGCGTGTCTTAAGAATTCTTCGATTCAGTATAGAAGGCTTGATGGAACAATGTCAGTTGTTGCAAGAGATAAAGCTGTTAAAGATTTTAATACCCTCCCAGAGGTAACAGTTATGATTATGTCTTTGAAAGCGGCCAGTCTTGGTCTCAACATGGTAGCGGCCTGCCATGTACTTTTGCTTGATCTATGGTGGAATCCTACAACTGAAGATCAAGCAATAGACAGAGCACATCGAATTGGGCAGACTCGCCCTGTAACTGTTTTGCGGTTGACTGTGAGAGATACGGTTGAGGATCGTATTTTAGCTCTACAGCAAAAGAAGCGGAAGATGGTTGCATCTGCATTTGGGGAAGATGAAACTGGCGGTCGTCAAAGTCGCCTCACAGTGGATGATTTGAAATACTTACAGGCTATTCTTGGTGGCAGCAGAAGTCATGAAGCAACAAACAAGACACTTGCTAACAATGGATTGACGGTTGTAGTGAATAGAGATCAGTTGCAGATAGGAAGATAG 4068 0.4113 MADEGFDYSELVDADADADDNLFIDLDTVLNVLDEDCDPSESSPEGSSLKNVSPGESGIHDNFQLANGNSVLYSDHENQGPTSQTCSSSHAIPGSCQQLDPLDESNEICYTERGGVSGCEIPVHTVEPSFPETHFKNISVCGDNLNLNPLWKGENESQLKHVGEDVKSEYASYSPITENGDVNFAHYGALDEDMLEGASGQHETDSCTSFEVSFMDASRGSHIATSTNSTICQGSNVPSDYSDYISSLHSCRGVDERPLVSDSPLGCLPNVFGSQFWPNQEMMKNVKAENVECLTDTSRVSSNLYSTSTGGIPFQDNRFMSADSEFSSFFPGNASHVPSEDQVICVKGERELIARYQSSPYNDYNEFSVGQEMSQLPHAFPSTGCHSYNLLKCEDKATDIFSDIPHHFQEMFDGTDCKFPRDTADLNLQALDKSLPHVQASIASEKQFSCFKSEGEGNMIQCRSLDSHISKPSTELVQRDFLEHSRVEDDDSDIYIIESISHPAPTSQSAHLGNSQNALQHSAYGDSQSYMSRGARMRACDEQYILRVALQDLSQPKSEVIPPDGLMAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPSALIACHRAQKGELETLNLDADDDGLAENGGLKKDANMCQDMSSICPIKDNNLLIQTKGRPSAGTLIVCPTSVLRQWAEELQNKVTSKANLSVLVYHGSNRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKRNSEVHADLPPSKKRKCPSSKSGKKGLDSALLEVSARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTTFCSTIKIPINRNPSKGYKKLQAVLKTIMLRRTKGTLLDGEPIITLPPKLVKLKKVDFSREERDFYSRLEADSRAQFQEYAAAGTVKENYVNILLMLLRLRQACDHPLLVKRYNSNSLWRSSVEMAKKLPREKQISLLKCLEASLALCGICNDPPEDAVVSACGHVFCNQCICEHLTGDDNQCPATTCKAQLSMSSVFSKTTLSCSLSGQASDSLLGCSGSEVEGYEPCSQSQPCDSSKIKAALEVLTSLCKPQDNASKNISMHINSEEDSDCPANVSDANKAKSFKEFPESQKMSEAGRSNDSVVREKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVTVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDETGGRQSRLTVDDLKYLQAILGGSRSHEATNKTLANNGLTVVVNRDQLQIGR 1355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2599 1355 Pfam Zinc finger, C3HC4 type (RING finger) 1009 1045 IPR018957 GO:0046872
Dere02g2599 1355 Gene3D - 542 631 IPR038718 -
Dere02g2599 1355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 901 1319 IPR027417 -
Dere02g2599 1355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1002 1060 IPR013083 -
Dere02g2599 1355 CDD SF2_C_SNF 1168 1275 - -
Dere02g2599 1355 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 775 905 - -
Dere02g2599 1355 ProSiteProfiles Zinc finger RING-type profile. 1009 1045 IPR001841 -
Dere02g2599 1355 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 429 1320 - -
Dere02g2599 1355 SMART ring_2 1009 1047 IPR001841 -
Dere02g2599 1355 MobiDBLite consensus disorder prediction 42 92 - -
Dere02g2599 1355 MobiDBLite consensus disorder prediction 36 92 - -
Dere02g2599 1355 SMART helicmild6 1182 1265 IPR001650 -
Dere02g2599 1355 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 586 855 IPR014001 -
Dere02g2599 1355 Pfam Helicase conserved C-terminal domain 1165 1265 IPR001650 -
Dere02g2599 1355 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 668 752 - -
Dere02g2599 1355 CDD DEXDc_SHPRH-like 571 893 - -
Dere02g2599 1355 ProSitePatterns Zinc finger RING-type signature. 1024 1033 IPR017907 -
Dere02g2599 1355 Gene3D - 1071 1345 IPR027417 -
Dere02g2599 1355 MobiDBLite consensus disorder prediction 747 771 - -
Dere02g2599 1355 MobiDBLite consensus disorder prediction 747 781 - -
Dere02g2599 1355 SMART ultradead3 567 870 IPR014001 -
Dere02g2599 1355 SUPERFAMILY RING/U-box 1006 1058 - -
Dere02g2599 1355 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1161 1318 IPR001650 -
Dere02g2599 1355 Pfam SNF2-related domain 591 970 IPR000330 GO:0005524|GO:0140658
Dere02g2599 1355 Gene3D - 641 757 IPR038718 -
Dere02g2599 1355 Gene3D - 783 894 IPR038718 -
Dere02g2599 1355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 556 893 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2599 Dere-ChrDere02 28753461 28764008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2599 454 1320 RAD5 or RAD16-like Gene Family AT1G61140 60.023 0.0 970
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere02g2599 SNF2_N 8e-69 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g2599 02 28753461 28764008 Dere02g2599 02 28753461 28764008 CCT