Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2572 ATGAACGATCTAATCTCAGGCTCCTTCAAGAAGTACACAGACTTGAAGCAGCAGGTGTACCTGGACGATGTGGAGGCAGGGAAGGAGAGCATCAACCTGGACAAGTTCTTCGAGGATGTGGAGAATGTGAAGGAGGACATGAGATATGTGGAGAAACTGTATCGGAAATTGCAGGAGGCGAATGAGGAGAGCAAAATTGTACACAATTCTCAGACCATGAAGGACCTTCGAGCCAGAATGGACAAGGACGTGGAGCAGGTGCTGAAACGGGTGAAGCTGATAAAGGGGAAGCTGGAGGCCCTGGAGAAGTCCAATGCAGCCCAGAGAGACGTCCCCGGCTGCGGACCGGGGTCGTCGGCCGACCGGACCAGAACCTCCGTGGTTAGTGGGTTGGGGAAGAAGCTCAAGGACCTCATGGATGACTTCCAGGGGCTAAGAGCCAGGATGCATCTTGAATACAAGGAAACAATTGAGCGCAGGTATTTCACAATCACAGGAGAGAAGGCAGACGAAGAAACCATAGAAAACTTGATATCCAGTGGGGAAAGTGAGAGCTTCTTGCAAAGGGCGATTCAAGAACAAGGAAGGGGTCAGATTATGGACACCATATCAGAGATTCAAGAGAGACACGACGCTGTAAAGGAGATAGAGAAGAATTTGATTGAGCTGCACCAAGTGTTCTTGGACATGGCGGCTCTGGTGGAGTCTCAGGGCCAGCACCTCAATAACATCGAGAGCCACGTGGCGCATGCTAGCTCGTTCGTCAGACGAGGCACCGAACAGCTTGAGGAGGCCAGAGAGCACCAGAAAGCCTCCAGGAAGTGGACCTGCATTGCCATACTTCTTGGAATCGTTCTCATCATTGTGCTCCTGTTTCCCATCCTGATTCAACTTGTACCTCAGTTGTTGAGGACAAGTGGGCATGCTGAGAGCGGTGGAAATGGGAGTTTGGTGATTTCATGTTCAGGCTTTTCATGTAAATAG 984 0.5071 MNDLISGSFKKYTDLKQQVYLDDVEAGKESINLDKFFEDVENVKEDMRYVEKLYRKLQEANEESKIVHNSQTMKDLRARMDKDVEQVLKRVKLIKGKLEALEKSNAAQRDVPGCGPGSSADRTRTSVVSGLGKKLKDLMDDFQGLRARMHLEYKETIERRYFTITGEKADEETIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQHLNNIESHVAHASSFVRRGTEQLEEAREHQKASRKWTCIAILLGIVLIIVLLFPILIQLVPQLLRTSGHAESGGNGSLVISCSGFSCK 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2572 327 Gene3D - 33 160 - -
Dere02g2572 327 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Dere02g2572 327 SMART SynN_4 28 154 IPR006011 GO:0016020
Dere02g2572 327 Coils Coil 84 104 - -
Dere02g2572 327 CDD SNARE_syntaxin1-like 202 264 - -
Dere02g2572 327 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Dere02g2572 327 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Dere02g2572 327 CDD SynN 33 190 IPR006011 GO:0016020
Dere02g2572 327 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Dere02g2572 327 FunFam Syntaxin 132 196 296 - -
Dere02g2572 327 Coils Coil 40 63 - -
Dere02g2572 327 PANTHER SYNTAXIN 41 285 IPR045242 -
Dere02g2572 327 Gene3D - 195 297 - -
Dere02g2572 327 SMART tSNARE_6 198 265 IPR000727 -
Dere02g2572 327 Pfam SNARE domain 241 291 IPR000727 -
Dere02g2572 327 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2572 Dere-ChrDere02 28446508 28448501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2572 1 302 SNARE and Associated Proteins AT1G61290 77.483 3.45e-176 488