Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2571 ATGGCCACTGTTCCGTCTTCTTCGTCGTCAAAGGTGTGCTACAATTCTGAGTGTAAAGAATTGAAGTCAGACAGACCTAAGAAGGGTTGGAGACTCCGTACTGGAGAGTCTGCCGAGCTTTGTGATCGATGCGGTTCTGCTTTCGAAGAAGGAAGATTTTGTGAAATTTTTCACTTGAATGCTTCTGGTTGGAGAACTTGCGAGACATGTGGGAAGGGGATTCATTGTGGGTGTATTGTTTCAAGTACTGCCTTTATGTTGTTGGATCCTGGAGGCATCGAATGCATTGCATGTGCCAGGAAAAATATTATTTTGCCATCCAATCTGCCATGGCCTCCGCCTTTTTCTCTCCAAAGTCGTTTTTCTGATAGACTTAGAGACCTGTCTCCAAAAAATTGGAGTCAGTTAGCTGGATCAGGTCCTGTACCATGGAAGCAAGCTCCCAGTTTGTTCAATCCAGCTTCTTCATCTGACAGGCACCCAGATGTGCCCTCTGTAGTTGAAGTATCTGGTGTTGACAATATTTATGGAAATGAAAGGTTACCTGCCTCGTCCCTGGAAAAGAAAAATGATGATCTATCAGGAATAGCTAATTGGAATAAGATTGGAGCACGGGAAATGATGTTTATAAATGGAATGCGGAATGATGAAAAGTCAAGTTCATGCTTAACTATGTGCCAGCAGCCTTCTTCTATAAAAGAAGATTCATCAACCCAACCATTTGGTTTGACTGTTCCTTATGCATCTCAAAATGAAAGAAATGGTCAAATTGGTGTAACTGGAAGTCATCCACAACAAACTCCTCCACCTCCTCATGGAAAGCAATTTAGTGGCCCTGTACATATTCCACTTGATTCATCAGGTGAATCACAGGTTCGAAATGGACGGCCCAGAGCAGATGCCCGAGGAAGAAACCAGTTGCTGCCACGGTACTGGCCCAGGTGTACTGATCAGGAGCTACAGCAAATATCTCTTGATTCTAATTCTGTAATTACTCCACTGTTCCAAAAAACGTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTCTAGTGCTACCAAAAAAATGTGCAGAGGCCTACTTTCCACCAATTTCTCAGCCTGAAGGGTTGCCTCTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAGTTTCGCTTTTGGCCCAACAATAACAGTAGAATGTATGTTTTAGAAGGTGTAACTCCCTGCATACAGTCAATGCAATTGCAAGCAGGTGACACAGTAACATTTAGTCGGTTGGAGCCAGAGGGGAGGTTGGTTATGGGATTTCGAAAGGCTTCTAGTGCTACCCAGTCTGATCAGGACAATGAAACAAACAAGACTGGAAATGGATATTCTACACATGGTGAAGTTGAATTGGCAGATCCTAGTTCATGGTCTAAAGTTGACAAGTCAGGATATATAGCAAAAGAAGCACTTGGGAGCAAATCTTCAATTTCGAGGAAGAGAAAGAGTAATGCTTTGGGATCAAAGAGTAAGCGTCTAAGAATTGAAAATGAGGATCTGATAGAGCTGAACATTACATGGGAAGAAGCTCAAGGCCTGCTCCGTCCCCCTCCTAACCATGTTCCCAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGATGCTCCAGTGCTTGGAAAACCCACAATTTTCACCACTGATAATGTTGGTGAAAAGATCCAGTGGGCTCAATGTGAAGATTGTCAAAAATGGCGCAAATTGCCAGCTACTGCTCTTCTAACATCAAGATGGACATGTTCTGATAATTCGTGGGACCCAGAAAGATCTTGTTTAGCAGCACAAGAGTTGACAGCAGAACAGCTTGAAGATTTGCTTCCCCCTTGTAATTCAGTTGTATCCAAGAAAATGAAGGCTGCCAAGCAGGATCCTGATAATGTTGAAGCTTTGGAAGGACTTGATACTCTTGCAAACCTAGCTATCTTGGGAGAGGGGGAGGCACTCCCAGCATCATCTGCCCAAGCCACAACAAAACACCCTCGGCATCGACCTGGCTGCTCTTGCATTGTTTGCATTCAGCCTCCTAGTGGGAAGGGCCCCAAGCATAAGCAGACATGCACATGTAATGTGTGCTTGACAGTGAAGCGTCGGTTCCGTACCCTGATGTTACGACGCGAAAAGAAACAATCAGAGAGAGAAGCAGAGACAACACGTAAAAAGCAGCAGCCTCAGCCACCTCAGCCACCGCCACCTATGTCAGAGATATTGCTTGAGGATGATTCCCTGCCTTGCAGTAACACAGGAGATAGTAGTAGTCCAAACCAGAACAGGGAGGGCAATGAAGGTTCTGATGATGACCCTAATAGGATGAAATCATCCGCCTCACCTTTTAAAGGCCAAATTGACCTCAATATCCAGCCAGAGCGAGAGGAAGAGCTGTCACCTAGTTCAGATTCTGGAAGCATGATTAAGTTGCTCCATGATGCAACTGAGAGGTATCTCAGGCAGCAGAGTATGGCAAACTCCTTCGCTGGAGATACATCAGGTGTGCAGTCGCAGCAAGTTGGAGATGAAGCAAGGGAAGAGAAACTTTGCAATGGTGTAGCCCTTGGCAATAGTAACCATAATGCTGACAAGGAACATGCCCAAACTTTGTCTATGAATGTGTGA 2649 0.4466 MATVPSSSSSKVCYNSECKELKSDRPKKGWRLRTGESAELCDRCGSAFEEGRFCEIFHLNASGWRTCETCGKGIHCGCIVSSTAFMLLDPGGIECIACARKNIILPSNLPWPPPFSLQSRFSDRLRDLSPKNWSQLAGSGPVPWKQAPSLFNPASSSDRHPDVPSVVEVSGVDNIYGNERLPASSLEKKNDDLSGIANWNKIGAREMMFINGMRNDEKSSSCLTMCQQPSSIKEDSSTQPFGLTVPYASQNERNGQIGVTGSHPQQTPPPPHGKQFSGPVHIPLDSSGESQVRNGRPRADARGRNQLLPRYWPRCTDQELQQISLDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSATQSDQDNETNKTGNGYSTHGEVELADPSSWSKVDKSGYIAKEALGSKSSISRKRKSNALGSKSKRLRIENEDLIELNITWEEAQGLLRPPPNHVPSIVVIEGFEFEEYEDAPVLGKPTIFTTDNVGEKIQWAQCEDCQKWRKLPATALLTSRWTCSDNSWDPERSCLAAQELTAEQLEDLLPPCNSVVSKKMKAAKQDPDNVEALEGLDTLANLAILGEGEALPASSAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKQQPQPPQPPPPMSEILLEDDSLPCSNTGDSSSPNQNREGNEGSDDDPNRMKSSASPFKGQIDLNIQPEREEELSPSSDSGSMIKLLHDATERYLRQQSMANSFAGDTSGVQSQQVGDEAREEKLCNGVALGNSNHNADKEHAQTLSMNV 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2571 882 MobiDBLite consensus disorder prediction 716 813 - -
Dere02g2571 882 MobiDBLite consensus disorder prediction 433 467 - -
Dere02g2571 882 MobiDBLite consensus disorder prediction 756 771 - -
Dere02g2571 882 MobiDBLite consensus disorder prediction 253 301 - -
Dere02g2571 882 Gene3D - 313 440 IPR015300 -
Dere02g2571 882 ProSiteProfiles Zinc finger CW-type profile. 563 612 IPR011124 GO:0008270
Dere02g2571 882 MobiDBLite consensus disorder prediction 861 882 - -
Dere02g2571 882 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 10 842 - -
Dere02g2571 882 MobiDBLite consensus disorder prediction 862 882 - -
Dere02g2571 882 FunFam B3 domain-containing transcription repressor VAL1 313 440 - -
Dere02g2571 882 MobiDBLite consensus disorder prediction 717 732 - -
Dere02g2571 882 Pfam B3 DNA binding domain 335 434 IPR003340 GO:0003677
Dere02g2571 882 Pfam CW-type Zinc Finger 568 609 IPR011124 GO:0008270
Dere02g2571 882 ProSiteProfiles B3 DNA-binding domain profile. 335 436 IPR003340 GO:0003677
Dere02g2571 882 MobiDBLite consensus disorder prediction 434 455 - -
Dere02g2571 882 CDD B3_DNA 333 434 IPR003340 GO:0003677
Dere02g2571 882 SUPERFAMILY DNA-binding pseudobarrel domain 332 435 IPR015300 -
Dere02g2571 882 Gene3D - 558 614 - -
Dere02g2571 882 SMART B3_2 335 436 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2571 Dere-ChrDere02 28432608 28444739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2571 9 721 B3 DNA Binding Superfamily AT4G32010 45.942 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere02g2571 B3 9.6e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g2571 02 28432608 28444739 Dere02g2571 02 28432608 28444739 ECH