Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2545 ATGGGAAGAGCACCGTGTTGTGACAAGAACGGCCTCAAGAAAGGCCCCTGGACTCCCGAAGAAGACCAGAAACTCATCGATTATATCCAGAAGCATGGCTACGGCAACTGGAGGACACTTCCTAAGAATGCCGGGTTGCAAAGGTGGTCGGCCATTGCTTCCCGATTGCCTGGAAGAACAGACAACGAGATAAAGAACTACTGGAACACCCACATTAGGAAGAGGCTTCTTCGTATGGGAATTGATCCCGTGACTCACACCCCACGCCTTGATCTCCTGGACCTCAATTCCCTTCTCTATGCCTCATCTTCCTCGCAACTCAACAACGATTTTTCAAGCCTGCTTGGGATGCAACCTTCTCTCCTCAACCCACAGCTTCTCAAGTTAGCTTCTTCCCTTCTTTCATCTCAACGCAGAGATCACAATCCTCAGAACACCAACTTCTGCCATCAAATCCCGGACACATCTTCATTTCAAGAAATGCCTTCTTTTCCTGAAGCACAATTAATGGTCCAGCCCGAGAATAATGTGGATCCATACCCTTCTTTGAACTTCACCGACTTCACCGATTGGCAAATCTGTAGTGGAATGGCTTCCACCACTGCTAACACCACCACGACCACTACTGTTACAACTCTAGCAGAGGACTATGTCCCTTCATTGTTACCAAGCTTCTGTTATTACACTTCTGATCAACATCAACATCTCATGGACCCTCAAAATAACTTCATGGCTTCAGTTCTATCCACCCCATCGAATTCTAATTCAACGTATATCAATGGAGGCAGCAGCACGGAGGATGAGAGAGAGAGCTACAATAGCAGCAATATGTACAAGTTCGAAATCCCTGACATCATAGATGTTAATGACTTCATCTAA 879 0.463 MGRAPCCDKNGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHTPRLDLLDLNSLLYASSSSQLNNDFSSLLGMQPSLLNPQLLKLASSLLSSQRRDHNPQNTNFCHQIPDTSSFQEMPSFPEAQLMVQPENNVDPYPSLNFTDFTDWQICSGMASTTANTTTTTTVTTLAEDYVPSLLPSFCYYTSDQHQHLMDPQNNFMASVLSTPSNSNSTYINGGSSTEDERESYNSSNMYKFEIPDIIDVNDFI 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2545 292 CDD SANT 16 72 IPR001005 -
Dere02g2545 292 Gene3D - 11 78 - -
Dere02g2545 292 SMART sant 13 74 IPR001005 -
Dere02g2545 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 76 IPR017930 -
Dere02g2545 292 Pfam Myb-like DNA-binding domain 14 71 IPR001005 -
Dere02g2545 292 ProSiteProfiles Myb-like domain profile. 9 72 IPR001005 -
Dere02g2545 292 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 48 229 - -
Dere02g2545 292 SUPERFAMILY Homeodomain-like 8 82 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2545 Dere-ChrDere02 28089282 28090543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2545 1 292 MYB Transcription Factor Family AT4G21440 42.265 3.46e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere02g2545 Myb_DNA-binding 1e-16 CL0123