Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2543 ATGGGTGAGGGGGAAGATTTGCCGGATCATCTGCGCTGCAAGCGCACTGATGGGCGGCAATGGCGATGCAGCCGGCGAGTGATGGACAACGTGAAGCTTTGTGAGATTCACTATCTTCAAGGCCGCCATCGGCAATACAAGGAGAAGGTGCCGGAGTCGCTGAAGCTTCAAAGAAAGCGCAAGAACGGGTTTAATAAGGATGACTCTGTTCTCAACAACGTTAAAATGAAGGCACAGAAAGTGGGCAAGATGGCGAAGATGATGAAAAAAAGGCTGAAAGTATCTGATGATTCAGAAGTAATGGAAGCTCCTATGGTGAAGAAAGCGTCCAAGCAGGGTGATAAGCAGTTGGAGTTGATAAGGATGGTGCTGAAGAGAGAGGTTGAGAAGAAGAAGAAGAAGCAGCGAGAGAAGAAGAGGAACAAGAAGGAGGAAGAGGAGGGGTTACATTACAGTGAGGGAGAGTTAACAAAAGAATTGCCCAATGGTTTAATGGCAATTTCTAAGGCATCAACGGCCCAAGAATACTGCAATGTATGTTCCCATTGTGATGTTAAATTATGTGTTGATCATAAAGCAATTACTCCTCGTTACTTCAGGTCGAAGAATGTTGAGAGGCTGCCCGTTGGCAAATCAATGGTTGTACCATATGGGCGAAACTTGAAAAAGAGTAAGAGGAAGAAATGCCATTGGTGCCAGAGAAGCGATTCTTGGAATCTCATAAAGTGTTCGAGCTGTCATAAAGAGTTTTTCTGCATGGATTGCATCAAAGAACGGTATTTCGATACTCAAAATGAAATTAAGATGGCATGTCCTGTTTGCCGAGGAACCTGCACCTGTAAAGACTGCTTGGCAAGTAAATGTGAAGACAATGAAACTAAGGACCTTTTGGCTGGTAAAAGCAGAGTTGATAGAATACTTCATTTTCATTATTTGATCTGTATTCTCCTTCCTGTGCTAAAACAAATAAAGGAAGACCAGAATGTTGAGATAGAAACAGAAGCTAAAATCAGAGGTAAAAGACCCTCTGATATTCATATTAAGCAGGTTGAATTTTGTGGCAATGACCAAAATTACTGCAATCACTGCAAAACACCCATTTTGGATCTCCATAGAAGCTGCCCTAGTTGTTCCTATAGCCTTTGCTTAAGCTGTTGCTATCAATTACGTCAAAGGAACTCATCTGGAGAAATTAAATCATCTACATGCAAGTTATCTGATGGAATGAAAGCTTGTCTTGCTAGTGAAGCCAATCTTTTGGATAAGAAGGTCATTTCCAATGGTAATTCAGTAGCTACTTTGTTGTTGCCTGACTGGACAAACTCTAATGGTACTGGCAGTGTATCTTGCCCACCCAACGAGCTTGGCGGTTGTGGTGATAGCCTTCTTGAACTCAGATGTGTTTTTCCCTTCAGTTGGATCAAAGAGATGGAAGTAACAGCAGAAGAAATAGTTTGCAGCTATGACTTTCCTGAAACTTTGGATAAAAGTTTGAGCTGCTCACTGTGTCCAGACACGGATGATAAAATTGATGGATTTAAGCAGTTACAAGAAGCAGCTCTTAGAGAAGATTCAAAAGATAATTGGTTGTTTTATCCCACTGTTTTGGACATCGGTGGTGATAACTTTGAACACTTTCAGAAGCACTGGGGAAAAGGCCATCCAGTAGTAGTGCGAGATGTGCTCCAAAGTACATCAAACCTCAGTTGGGATCCATTGGTCATGTTCTGTGCTTATCTTGAGGGGAACATTACAAGATATGAGAATGACAAGGATAAACTTGAAACTTGTTTGGATTGGTGTGAGGTGGAAATTAACATTAGGCAGTCCTTTACTGGATCTCTTAAATGTCAGCCACAGAGAAACATGTGGCATGAGATGTTGAAATTGAAGTGGTTGCTGTCTTCTCAACTATTCAAAGAACGGTTTCCATCTCATTATGCTGAAGTAATTAATGTTCTACCACTTCAAGAATACATGAATCCGACGTCGGGATTTCTGAATTTAGCTGTAAATTTGGCACAGGGGAATGCAAAACATGACCTAGGGTCATATGTCTATCTTTCATATGGCTGTGGTGATGAAAAAAGTGGTTTTGTGACAAAACTCTGTTATGACCCATATGATGTGGTTAATATTATGGCACATACTGCGGATGCCCCACTCTCTACAGAACAGCTGACTAAAATAAGGAAGTTACTGAAAAGGCATCAAACTCTATGTCAGAGGGAGTCTTCCAAAATTACTGCTGAGCAATTAAAAGAACAGAGAGAGAAAGTAAATTCACTATTGCCTGCTGAAGATATTGAGAAGACAGGGTTGCATAGTATGGGTAGAGAAGAAATGCGCTTCTTCAGGAGAGTTAATAGAACATCTTGCATCTTTACTGAAGTAAAAGATGTAGCTAATCATACTATGGACAGCAAAATTTCCCAGGATGAAGAATGTAACTCTGATTCTGATTATGAATTCTCTTCACTTTGTCGAGGGAATGTTCAAAGAACTAAGTTGTCTCCACATCATAATTGTAGAAGTCCCTTTGGAAGCTCAAATAATGGTAAAAATGAAAAGTTTGTGGTACATTCTGTAGCCCAGTGGGATGTCTTTCGCAGACAAGATGTTCCAAAACTCATAGAATACCTTAAATTACACGCTGCTGAAATTTCTCCTACCCATGAGTATCATAAGCAGATGGTCCATCCACTTTTAGATCAGAGCTTCTTTCTTGACAATACTCACAAAATGAGGCTCAAGGAGGAATTTAAAATTGAACCGTGGACTTTTGAGCAACATGTTGGTGAAGCTGTCATTATTCCTGCTGGATGTCCATACCAGATTAGGAGTTCTAAGGGTTGTGTTCAGGTAGTATTAGAATTTGTTTCCCCTGAGAATGTTACTGAGTGTATCCAGTTGATTGATGAAGCCCGTCTGCTTCCAGAAGACCATCAAGCAAAAGTAGATCATCTTGAGGTGAAGAAAATGGCGCTTTATAGCATCAATTCAGCAATAAAAGAGATACGTGAGCTTACGTCCAAGGTGTGA 3042 0.407 MGEGEDLPDHLRCKRTDGRQWRCSRRVMDNVKLCEIHYLQGRHRQYKEKVPESLKLQRKRKNGFNKDDSVLNNVKMKAQKVGKMAKMMKKRLKVSDDSEVMEAPMVKKASKQGDKQLELIRMVLKREVEKKKKKQREKKRNKKEEEEGLHYSEGELTKELPNGLMAISKASTAQEYCNVCSHCDVKLCVDHKAITPRYFRSKNVERLPVGKSMVVPYGRNLKKSKRKKCHWCQRSDSWNLIKCSSCHKEFFCMDCIKERYFDTQNEIKMACPVCRGTCTCKDCLASKCEDNETKDLLAGKSRVDRILHFHYLICILLPVLKQIKEDQNVEIETEAKIRGKRPSDIHIKQVEFCGNDQNYCNHCKTPILDLHRSCPSCSYSLCLSCCYQLRQRNSSGEIKSSTCKLSDGMKACLASEANLLDKKVISNGNSVATLLLPDWTNSNGTGSVSCPPNELGGCGDSLLELRCVFPFSWIKEMEVTAEEIVCSYDFPETLDKSLSCSLCPDTDDKIDGFKQLQEAALREDSKDNWLFYPTVLDIGGDNFEHFQKHWGKGHPVVVRDVLQSTSNLSWDPLVMFCAYLEGNITRYENDKDKLETCLDWCEVEINIRQSFTGSLKCQPQRNMWHEMLKLKWLLSSQLFKERFPSHYAEVINVLPLQEYMNPTSGFLNLAVNLAQGNAKHDLGSYVYLSYGCGDEKSGFVTKLCYDPYDVVNIMAHTADAPLSTEQLTKIRKLLKRHQTLCQRESSKITAEQLKEQREKVNSLLPAEDIEKTGLHSMGREEMRFFRRVNRTSCIFTEVKDVANHTMDSKISQDEECNSDSDYEFSSLCRGNVQRTKLSPHHNCRSPFGSSNNGKNEKFVVHSVAQWDVFRRQDVPKLIEYLKLHAAEISPTHEYHKQMVHPLLDQSFFLDNTHKMRLKEEFKIEPWTFEQHVGEAVIIPAGCPYQIRSSKGCVQVVLEFVSPENVTECIQLIDEARLLPEDHQAKVDHLEVKKMALYSINSAIKEIRELTSKV 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2543 1013 ProSiteProfiles JmjC domain profile. 662 976 IPR003347 -
Dere02g2543 1013 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 9 1011 IPR045109 GO:0032454|GO:0033169
Dere02g2543 1013 MobiDBLite consensus disorder prediction 129 152 - -
Dere02g2543 1013 ProSiteProfiles Zinc finger RING-type profile. 229 275 IPR001841 -
Dere02g2543 1013 SMART cupin_9 643 976 IPR003347 -
Dere02g2543 1013 ProSiteProfiles WRC domain profile. 7 53 IPR014977 -
Dere02g2543 1013 Gene3D Cupin 536 985 - -
Dere02g2543 1013 Pfam JmjC domain, hydroxylase 848 957 IPR003347 -
Dere02g2543 1013 Pfam WRC 8 49 IPR014977 -
Dere02g2543 1013 SUPERFAMILY Clavaminate synthase-like 542 993 - -
Dere02g2543 1013 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2543 Dere-ChrDere02 28014514 28020655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2543 8 47 GRF Transcription Factor Family AT2G22840 52.500 2.44e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dere02g2543 JmjC 1.4e-09 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g2543 02 28014514 28020655 Dere02g2543 02 28014514 28020655 CCT