Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2540 ATGACGTCACATCACCCGGCGGAGTTCGACGTCGACTCCGTGGCTTCGTCCCCTCGTTCCGACCATTTTCATGAACCAGTGCAGCGTGTCCGGTTCATGTGCAGCTTCGGCGGCAAGATAATACCCCGTCCCCACGACAACCAGCTCCGCTACGTTGGCGGCGACACCCGGATCGTCGCTGTCCATCGCTCCATCTCCTTCTCCGGTCTCCTTCTCAAGCTTTCTAAGCTCTCAGGCACTACCAATATAACAGTGAAGTACCAGCTTCCGAATGAGGATCTGGACGCGTTGATTTCCGTCACGACAGACGAGGATGTGGAGAACATGATGGATGAGTACGAGCGGTTAGCACAGAACCAGAACCCCCGCTCGACTCGGCTCCGGGTCTTCTTGTTCGTCAAGGAAGAAGATTCTAGAGCCAGCAGCATCAGCTCGCTCCTGGACGGCTCTGCCAACCGCGAGAACTGGTTCGTCGACGCCCTCAACGGCGGCGGAGCCCGGCTCGAGCGAGGCCGCTCCGAGGCGTCCTCCATGCTGTCGGAAGTGCCTGATTATCTCTTCGGGTTGGAAAACTCCGATGAACCCCAACTCCGTGAACCGAGATCCAAGACCCGACCCCTTCTCCACGACAACGCCTCTTGTTCGGATCCTGGTTCGCCTGCTCCGGCTGTCACCTCCCCATTCTGTTCCACGTCATCAGTTCCAAATGTGCCGTCTATGCCGAACCTCCCACCGGTTAAAACCAAACCCGATAACCCTGTTCCTGTCACGGATTCAAAAGAAAACCAAATTGACGATTATCAAACCGGAAACTACGGTAACCCGGTACCCAACTACAACCCGGATTCTACTTATTCGGGTCATTCTGTACAACCTGTTCCGGTTTACTATGTCCCGGGTCCGGTTCCGGTTCAACACGGGCAAGTAGCGGTCCAACCCGTCACGATCCCCCCACCTTATGTTCAGCAATACCAAGCGGTACTGCCAGCTCAGATGCCGATGGGTTATCCTCATGTGGTTTCGGGTTCGGGTCAAGTATACGGCGGAGGGATGAGACACGTCGGTGCGGTGCATCCATATGATGCGGCAGCGAGGGTAGTTTCGGACGGCGTGAGGCAGCATGTGTACCATGCAGTTCCGAATCCCGGCGGTGCTCCCGTTTATCCGGTGACGGCGATGGCAGGTGGGGACGAATCACGCAGACCAGGAGTGGAGTATGGTTCCGGTCGGGTCCCCAACACTGATTGA 1248 0.5681 MTSHHPAEFDVDSVASSPRSDHFHEPVQRVRFMCSFGGKIIPRPHDNQLRYVGGDTRIVAVHRSISFSGLLLKLSKLSGTTNITVKYQLPNEDLDALISVTTDEDVENMMDEYERLAQNQNPRSTRLRVFLFVKEEDSRASSISSLLDGSANRENWFVDALNGGGARLERGRSEASSMLSEVPDYLFGLENSDEPQLREPRSKTRPLLHDNASCSDPGSPAPAVTSPFCSTSSVPNVPSMPNLPPVKTKPDNPVPVTDSKENQIDDYQTGNYGNPVPNYNPDSTYSGHSVQPVPVYYVPGPVPVQHGQVAVQPVTIPPPYVQQYQAVLPAQMPMGYPHVVSGSGQVYGGGMRHVGAVHPYDAAARVVSDGVRQHVYHAVPNPGGAPVYPVTAMAGGDESRRPGVEYGSGRVPNTD 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2540 415 SUPERFAMILY CAD & PB1 domains 45 141 - -
Dere02g2540 415 Pfam PB1 domain 45 133 IPR000270 GO:0005515
Dere02g2540 415 Gene3D - 50 134 - -
Dere02g2540 415 MobiDBLite consensus disorder prediction 190 270 - -
Dere02g2540 415 MobiDBLite consensus disorder prediction 218 237 - -
Dere02g2540 415 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 49 134 - -
Dere02g2540 415 MobiDBLite consensus disorder prediction 255 270 - -
Dere02g2540 415 MobiDBLite consensus disorder prediction 1 21 - -
Dere02g2540 415 ProSiteProfiles PB1 domain profile. 29 132 IPR000270 GO:0005515
Dere02g2540 415 SMART PB1_new 44 132 IPR000270 GO:0005515
Dere02g2540 415 MobiDBLite consensus disorder prediction 395 415 - -
Dere02g2540 415 CDD PB1_UP2 33 132 - -
Dere02g2540 415 PANTHER OS05G0427100 PROTEIN-RELATED 12 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2540 Dere-ChrDere02 27977757 27979094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2540 19 132 MAP Kinase Kinase Kinase AT3G46920 51.754 8.53e-33 129