Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2533 ATGGCTACTCACCTTCCCGACCACTTCAAGTGTCCGATTTCCCTAGAGATAATGTCTGACCCGGTTATACTCTCGTCGGGTCACACCTTCGACCGGGCCTCCATCCAACGGTGGCTTGACGCCGGTCACCGGATTTGTCCAATTACCAAATTACCCCTCCCTGATTACCCTTCGCTCATCCCCAACCATGCTCTCAGAAGCTTGATTTCCAACTACGCTCTCATTTCGCCTCTCAAGCAGCAGCCACCTCCCCAACCCGAAACCCTAATCTCCATGCTGACCTCTCGGTCTTCTTCCCTGGACTCTAAAATTGAATTGCTAGACCAACTCACCCGGCTTTCCAAGCGTGACTCGGTGTTCCGCCGGCGGTTGACTGAGTCAGGGGTCGTGTCGGCGGTGCTGAACTGTGTTGACTCCAGTGATTCTGGTCTTCGGGAGAAGGCCCTCTCCTTGCTATTGAATCTGAGTCTTGACGATGATAACAAGGTGGGATTGGTGGCGGAAGGCGTGATAGGTCGAGTTGTGGCAGTTCTGCAGGGTGGCTCCCCGGATTGCCGAGCGATAGCGGCAACTATGCTGACCAGCTTGGCGGTTGTGGAAGTTAATAAAGCCACAATTGGTGTGTACCCAAATGCGATTGAAACTCTAGTTTCGCTTCTTCGGAATGGTAAAGGGAGAGAGAAGAAGGAAGCGGCCACAGCGCTTTATGCCATCTGTTCTTTTCCTGATAATCGGAGGAGAGCTGTGGAATGTGGCGCTGTGCCCATTTTGCTTAGAACTGCTGATTCCGGGCTTGAAAGGGCTGTTGAAGTTCTGGGTATTCTGGCTAAGTGTAAAGAAGGTAGAGAGCAAATGGAAAGTTATTATGGATGCATACAAATTCTAGCTCGGGTTTTGAGCAATGGAAGCTCGAGGGGAGTTCAATATGCGCTGTTGGCATTGAATTCCCTTTGTTGTAATAGTGAAAAAATGTGTTTAGAGGCGATAAAAGAAGGAGTTTTGGAGATGTGTCTTGCATTGCTGGATGACGATAACGAGAAAGTAAGAAGAAACTCATGCAGTTTGATTCAGGTTCTGCGTGGCAACCAGTGGATGAGTTGA 1101 0.4977 MATHLPDHFKCPISLEIMSDPVILSSGHTFDRASIQRWLDAGHRICPITKLPLPDYPSLIPNHALRSLISNYALISPLKQQPPPQPETLISMLTSRSSSLDSKIELLDQLTRLSKRDSVFRRRLTESGVVSAVLNCVDSSDSGLREKALSLLLNLSLDDDNKVGLVAEGVIGRVVAVLQGGSPDCRAIAATMLTSLAVVEVNKATIGVYPNAIETLVSLLRNGKGREKKEAATALYAICSFPDNRRRAVECGAVPILLRTADSGLERAVEVLGILAKCKEGREQMESYYGCIQILARVLSNGSSRGVQYALLALNSLCCNSEKMCLEAIKEGVLEMCLALLDDDNEKVRRNSCSLIQVLRGNQWMS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2533 366 SUPERFAMILY ARM repeat 87 359 IPR016024 -
Dere02g2533 366 Gene3D - 266 360 IPR011989 -
Dere02g2533 366 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Dere02g2533 366 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Dere02g2533 366 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Dere02g2533 366 PANTHER U BOX DOMAIN-CONTAINING 6 351 - -
Dere02g2533 366 SMART arm_5 241 277 IPR000225 GO:0005515
Dere02g2533 366 SMART arm_5 320 361 IPR000225 GO:0005515
Dere02g2533 366 SMART arm_5 278 319 IPR000225 GO:0005515
Dere02g2533 366 SMART arm_5 117 157 IPR000225 GO:0005515
Dere02g2533 366 SMART arm_5 202 240 IPR000225 GO:0005515
Dere02g2533 366 SMART arm_5 158 198 IPR000225 GO:0005515
Dere02g2533 366 CDD RING-Ubox_PUB 6 55 IPR045210 -
Dere02g2533 366 Gene3D - 71 265 IPR011989 -
Dere02g2533 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 70 IPR013083 -
Dere02g2533 366 FunFam RING-type E3 ubiquitin transferase 4 76 - -
Dere02g2533 366 SUPERFAMILY RING/U-box 4 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2533 Dere-ChrDere02 27885613 27886713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2533 1 361 U-box Gene Family AT4G21350 62.703 2.06e-156 442