Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2516 ATGGTTTCTCAGGAAAACCCCGATTGGATATTTGATTACGGTTATTTAGACGATGTTCACGTCCCTGGCGGTGACCTTCCATCCCTCGACCCACCCAATTTTTCTTGGTCCTCTCCTTCCCTCACCGCTCCTTCTGTTGATTTCAGTGTGGAGTTAGATGATTCGTATGGGAATCCTGATGGTATTAAGGAAACTGGTTCTAGAAAACGCCTAAGGTCAGGATCCAGCAATGCATCTGGTTCCAAAGCATGTAGAGAGAAAATGCGGAGGGATCGACTGAATGACAGGTTCCTCGAATTGGGTTCAATCCTTGATCCTGGCAGGCCTGCCAAAATAGACAAGGCTGTCATACTAAGTGATGCAGTTCGAGTGCTCTCTCAGCTGCGAGACGAGGCTCAGAAGCTTAGAGAGTCCAATGAGAATCTACAGGAGAAAATAAATGAATTGAAGGCTGAGAAGAACGGGCTCCGTGACGAGAAGCAGCAACTGAAACTGGAGAAAGATAACATTGAGCAGAAACTTAAAGCCTTGAATACGCAACCAGGCTTCTTGCCTCACCCTCCCACCCTTCCAGCTCCATTTCCTGCACCTGGACAAATTCTTGGGAGTAAGATGGTGCCATTCATTGGCTACCCGGGAGTTTCAATGTGGCAGTTCTTGCCACCTGCCGCTGTGGACACCTCACAGGACCATGTACTTCGTCCCCCAGTTGCGTAA 717 0.4854 MVSQENPDWIFDYGYLDDVHVPGGDLPSLDPPNFSWSSPSLTAPSVDFSVELDDSYGNPDGIKETGSRKRLRSGSSNASGSKACREKMRRDRLNDRFLELGSILDPGRPAKIDKAVILSDAVRVLSQLRDEAQKLRESNENLQEKINELKAEKNGLRDEKQQLKLEKDNIEQKLKALNTQPGFLPHPPTLPAPFPAPGQILGSKMVPFIGYPGVSMWQFLPPAAVDTSQDHVLRPPVA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2516 238 SMART finulus 83 134 IPR011598 GO:0046983
Dere02g2516 238 PANTHER BHLH TRANSCRIPTION FACTOR 4 238 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Dere02g2516 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 149 IPR036638 GO:0046983
Dere02g2516 238 CDD bHLH_AtILR3_like 82 157 - -
Dere02g2516 238 Coils Coil 118 180 - -
Dere02g2516 238 Gene3D - 81 160 IPR036638 GO:0046983
Dere02g2516 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 128 IPR011598 GO:0046983
Dere02g2516 238 Pfam Helix-loop-helix DNA-binding domain 81 128 IPR011598 GO:0046983
Dere02g2516 238 MobiDBLite consensus disorder prediction 52 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2516 Dere-ChrDere02 27597958 27601626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2516 1 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 57.551 5.62e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere02g2516 HLH 6.1e-10 No_clan