Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2494 ATGATACCTGAACTGGAAATAATGGCGGATCCTACCTTTCTTCATCAGTGGCACTTGAGTTCCCTTGATGATCCGAGTTTACTGCCAATAGCTGCTGCTTTTGAAGAGACCTTACATCAACGTTCATTCTCTAATCCAACCTTCATCCCCAGGACCACCATGGAAGCTACGCTTACTGGCATTGAAAGACCCCAGAAACAACTCAAACCCAACAATTGGAGTCCCAACAGAAGTGATCTGAATCAGACATTAGACACAGACTATGATTCATGTCCCAATCTTCTTTCTTTTGTCAATTCAAATTACATAAGTCAATTGGGAACATTGAAGCCAAAGGAGGAGACAGCATGGCCTAAAATCAACAGCACAATCCCTTCAGACATGTTGGTCTCTCCTGTATCCTTGGGAAATCAAAACTATGTCTTCAATGCGAGCCAAGATACCAGAAAGATTGGGACAAGCCCAAAACATTCTCAACCTCAAGACCACATAATCGCTGAAAGGAAGCGGCGAGAAAAGCTCAGCCAGCGGTTCATCGCTCTATCTGCTCTTGTCCCTGGCCTAAAGAAGACGGACAAGGCTTCTGTTCTTGGAGATGCTATAAAGTACTTGAAGCAATTGCAAGAGAAAGTGAAGGCTCTCGAAGAGGAACAGACAAGAAGGAGCACTATGGAATCAGTGGTGGTTGTGAAGAAATCTCATTTATTTGCTGAAGAAGGCGATGGTTCTTCAGATTCTGGTGGTCCCTTTGATGAACCACTGCCTGAAATTGAAGCTAGATTTTGTGAAAGAAACGTCCTCATAAGAGTTCACTGTGAGAAAAGGACAGGAATAATAGAAAGAACAGTGACTGAAATACAGAAACTCCATCTAATAGTCACAAGTAGCAGCGCCATGACATTTGGCAGTTCTGCTCTCGATATAACCATAATTGCTCAGATGGATATGGAATTTGGCATGACGGTGAAGGATTTAGTAAGAAGCCTACGCTCAGCTTTCAAATCTTTCACGTGA 1014 0.43 MIPELEIMADPTFLHQWHLSSLDDPSLLPIAAAFEETLHQRSFSNPTFIPRTTMEATLTGIERPQKQLKPNNWSPNRSDLNQTLDTDYDSCPNLLSFVNSNYISQLGTLKPKEETAWPKINSTIPSDMLVSPVSLGNQNYVFNASQDTRKIGTSPKHSQPQDHIIAERKRREKLSQRFIALSALVPGLKKTDKASVLGDAIKYLKQLQEKVKALEEEQTRRSTMESVVVVKKSHLFAEEGDGSSDSGGPFDEPLPEIEARFCERNVLIRVHCEKRTGIIERTVTEIQKLHLIVTSSSAMTFGSSALDITIIAQMDMEFGMTVKDLVRSLRSAFKSFT 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2494 337 Coils Coil 197 224 - -
Dere02g2494 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Dere02g2494 337 CDD bHLH_AtNAI1_like 161 232 - -
Dere02g2494 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 220 IPR036638 GO:0046983
Dere02g2494 337 SMART finulus 164 213 IPR011598 GO:0046983
Dere02g2494 337 Gene3D - 151 223 IPR036638 GO:0046983
Dere02g2494 337 Pfam Helix-loop-helix DNA-binding domain 161 208 IPR011598 GO:0046983
Dere02g2494 337 PANTHER BHLH TRANSCRIPTION FACTOR 35 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2494 Dere-ChrDere02 27253395 27255187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2494 142 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 53.535 8.66e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere02g2494 HLH 2.3e-10 No_clan