Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2489 ATGAAGGAGCTCTCTGCTCTGCATCTGTGTCAAGAGATTCAAGCACACGAAGGGTGTGTGTCGACGATGAGGTTTAGTTTGGATGGGCATTACATTGCGAGTGCTGGGGAGGATAGGGTGATTCATGTGTGGGAAGTGCTAGAGTTCAAAGTGATTGCGATGAGGCCAAAGGATGGGAGTCTGACGATAACTAGCCCTTTCCCTCTTCTTCCCTACAGTGTCGGTTTCCTCTGTGGTTGCATCGAGAGTAATGGGTGTGACAGAAGACGAGCAAAGCGTGCAAGGAAGGCGAGGAATGCAGGAGCGACTAAGAAATCTAAATCGAAGGCAGCAGCACGTGCGAGAAAATACTTGTTGGTCCGAAATAAAACTGGCCCTGAGCTGTCTATTAATTTACTTTTCTACCCTTCTATACTATGTGGAATGTGGCTGAGTTGTCGAAACGCCATACGGTCATGGTGCCACTTTCTATCTTTCAGTGCTTGGACGTGTGCTCTTTTCGTCCTCAAATTCGGGTTCGATATTTTTGGCCCTATAACTGTGTGCAAGGGAGGCACAGCTAAAGCCAAAAGCTCAACATACTTTTCTTTGCTATCTGCAGATTATATCTGGGTATTTAATAAGCGAAAACGACGAAATGTAGATGAGCTTCTTCCAGTGGGATTTCGTTATTGCTTGCTGAGCCGTACAACCATGTTGGAGTATCTAGCTTATTGCCAAAGCTTTAAGGGGTATTGCATTACCAAACACAAAAGACCAATTTGGACATACCCTCATGCTATTTCCCCAATCTGTGGAAGTTCTGTTTTCATGCTTTATTCATATGACAAGCAAGTGGCGCTAGTATCACAAAGTATTAGTCACAGGATTAGTCATAGGAATTATATGTCAGAAAATTTCTTTGGAGGCTCACCTTTCTTTGCTCCCACATTATCTGGTTGGAAAGGACCCTATTTTTTGAAGTGTAGGCAATCATATTGGGAACGGTTTCGGGCAAGTGTGGCATATGATTTTGCTGGCGCTGTTGAAGTCATCAATGATTTAGGATTGGATACTCTTACATTCTTGGCTGTCACTGTGTTAGTTGTGCCCACATTTAAGTTGATGAAAGCCAGTCCTATACTTGGTTTCTTCTTTGCTGGGGTGGTACTCAATCAGTTTGGTTTAATAAGAAACATCACAGATGTGAAAGTTTTGTCTGAATGGGGGATCCTTTTCTTGCTGTTTGAGATGGGTTTGGAGCTTTCACTTGCACGTCTGAAAGCTCTTGCTAAATATGCCTTTGGGATGGGACTGACTCAGGTTGTGTTATCTACTCTAGCATTTACTGCTTTCGAACTTCCACCTAATGGGGCTATTGGAACAAAAATTTTGGAGTTCCTTTTCCACTCAAGGCCTGATCTGGTGAACATTCGAAGTGTTGATGAAGCTGTAGTGATTGGTGCTGCTCTCTCCCTGTCTTCTTCTGCATTTGTCCTACAGCTTCTTGCAGAGAAAGGTGAGCTTCCTACAAGATTTGGTTCAGCAACTCTGGGAATTCTTCTTTTGCAGGACATTGCTGTTGTCCCTCTTTTAGTCATTCTTCCAATACTAGAGAGCCAGAATCTGGCTGAGGAAAGTATTTGGCCAATGCTTGCTCAAGAAAGTTTAAAGGCATTAGGTGGATTGGGTCTGCTTTCTCTAGGGGGAAAGTATATTCTTAGAAGAGTTTTTGAGGTTGTTGCTGATGCAAGGAGCTCAGAGGCTTTTGTTGCCCTTTGCTTGCTGACCATTGCTGGGACTTCACTCCTTACACAGAAGTTGGGCTTTAGTGATACGCTTGGAGCATTTTTAGCCGGGGCACTCTTAGCGGAGACAAATTTCAGGACACAGATTGAAGCAGACATAAGACCTTTTAGAGGCTTACTTCTTGGGCTATTTTTTCTTACTACTGGAACTTCCATTGACTTGCAGCTCCTTTCCCGTGAGTGGCCAAATGTACTTTCACTCTTGGCAGGTTTAATTGTTATCAAGACAACAATTATTACAGCTATAGGGCCTCGTGTGGGACTTACTTTACAAGAAAGTGTAAGAATAGGATTGCTTCTATCCCAAGGAGGGGAGTTTGGATTTGTGGTTTTCTCTTTAGCAAATGGGCTTGGGGTACTGCCACTTGAGCTCAACAAGCTGCTCATAATTGTTGTTGTATTATCAATGGCATTAACCCCAGTTCTTAATGAAGCTGGAAGAAGGGCTGCTGATTTTATTGATGACAAATTTGAAGCTGAAAATAAAGCTTCTGAGATGGTAAATTTCAATGCCAGTGAACCTGTTGTTATCCTAGGATTTGGACAAATGGGCCAGGTCCTTGCCAATTTCCTGTCCAATCCATTGGCTTCAGGAGGAGATAGTGATGCAGTAGGATGGCCTTACATAGCTTTTGATCTTGACCCTACCGTGGTTAAGGCAGCTAGAAACCTTGGTTTTCCAGTTCTCTACGGGGATGGATCACGCCCAGCCATTCTTCAATCTGCTGGTATCTCTTCTCCAAAAGCTATCATGGTTATGTATGCTGGGAAGAAAAAAGCAGTTGAGGCTGTTCAGAGACTACGGTTGACTTTCCCTGCAATTCCAATCTACGCCAGAGCTCAAGATCTCAAGCATCTTTTAGATCTGAAGAAAGCAGGTGCAACAGATGCCATTTTGGAAAATGCAGAGACTAGCTTACAGCTGGGTTCTAAACTTCTGCAAGGCCTCGGTGTGATGTCTGATGATGTGGCATTTCTGAGTCAGCTCATTCGAGATTCCATGGAGCTTCAAGCCCAAAAAGCACTTAGCAACTCTGAATATCGTGAATTAGATATGATGAAACCACTGCAGGTGAAAGTTGGTGATCTGATAGAGGCACAGGAACCTATGGCAACAGCTTCACCAGAGTATAAATTATCAGAACTGAACCAAACAGATAAAGCTTTCAAACAAGGTACTGAGGAAATCTCAATGGCTGGTGAACCAGACGCTTTGGAAGAGGAGAATCTGGTGGACCCATAG 3030 0.4356 MKELSALHLCQEIQAHEGCVSTMRFSLDGHYIASAGEDRVIHVWEVLEFKVIAMRPKDGSLTITSPFPLLPYSVGFLCGCIESNGCDRRRAKRARKARNAGATKKSKSKAAARARKYLLVRNKTGPELSINLLFYPSILCGMWLSCRNAIRSWCHFLSFSAWTCALFVLKFGFDIFGPITVCKGGTAKAKSSTYFSLLSADYIWVFNKRKRRNVDELLPVGFRYCLLSRTTMLEYLAYCQSFKGYCITKHKRPIWTYPHAISPICGSSVFMLYSYDKQVALVSQSISHRISHRNYMSENFFGGSPFFAPTLSGWKGPYFLKCRQSYWERFRASVAYDFAGAVEVINDLGLDTLTFLAVTVLVVPTFKLMKASPILGFFFAGVVLNQFGLIRNITDVKVLSEWGILFLLFEMGLELSLARLKALAKYAFGMGLTQVVLSTLAFTAFELPPNGAIGTKILEFLFHSRPDLVNIRSVDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPILESQNLAEESIWPMLAQESLKALGGLGLLSLGGKYILRRVFEVVADARSSEAFVALCLLTIAGTSLLTQKLGFSDTLGAFLAGALLAETNFRTQIEADIRPFRGLLLGLFFLTTGTSIDLQLLSREWPNVLSLLAGLIVIKTTIITAIGPRVGLTLQESVRIGLLLSQGGEFGFVVFSLANGLGVLPLELNKLLIIVVVLSMALTPVLNEAGRRAADFIDDKFEAENKASEMVNFNASEPVVILGFGQMGQVLANFLSNPLASGGDSDAVGWPYIAFDLDPTVVKAARNLGFPVLYGDGSRPAILQSAGISSPKAIMVMYAGKKKAVEAVQRLRLTFPAIPIYARAQDLKHLLDLKKAGATDAILENAETSLQLGSKLLQGLGVMSDDVAFLSQLIRDSMELQAQKALSNSEYRELDMMKPLQVKVGDLIEAQEPMATASPEYKLSELNQTDKAFKQGTEEISMAGEPDALEEENLVDP 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2489 1009 Pfam TrkA-N domain 771 894 IPR003148 GO:0006813
Dere02g2489 1009 SMART WD40_4 6 45 IPR001680 GO:0005515
Dere02g2489 1009 Gene3D - 347 746 IPR038770 -
Dere02g2489 1009 ProSitePatterns Trp-Asp (WD) repeats signature. 32 46 IPR019775 -
Dere02g2489 1009 Gene3D - 770 940 - -
Dere02g2489 1009 SUPERFAMILY WD40 repeat-like 9 52 IPR036322 GO:0005515
Dere02g2489 1009 Gene3D - 2 65 IPR015943 GO:0005515
Dere02g2489 1009 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 771 909 IPR036291 -
Dere02g2489 1009 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 46 IPR001680 GO:0005515
Dere02g2489 1009 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 46 - -
Dere02g2489 1009 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 332 971 - -
Dere02g2489 1009 Pfam Sodium/hydrogen exchanger family 354 739 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Dere02g2489 1009 FunFam Glutathione-regulated potassium-efflux system protein KefB 768 940 - -
Dere02g2489 1009 ProSiteProfiles RCK N-terminal domain profile. 770 902 IPR003148 GO:0006813
Dere02g2489 1009 FunFam K(+) efflux antiporter 3, chloroplastic 347 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2489 Dere-ChrDere02 27152899 27169155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2489 230 959 Inorganic Solute Cotransporters AT4G04850 72.087 0.0 995