Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2473 ATGGGGAGAGGGAAGATTGCGATTCGAAGGATCGAGAATTCGACGAGCAGGCAAGTGACTTTCTCGAAAAGAAGAAATGGATTGCTCAAGAAGGCCAAGGAACTGTCTGTTCTTTGTGATGCAGAAGTTGGATTGATTGTGTTCTCCAGCACTGGCAAGCTTTATGACTATGCAAGCACCAGCATGAAATCTGTTATTGAACGCTACAAGAAGCTGAAAGAGGAACATCTGATGCTTATGAATCCAGCTTCAGAAGTCAAGTTTTGGCAGAGAGAAGCAGCAAGCTTGAGGCAACAACTACAGTACTTGCAAGAATACCACAGGCAACTGATGGGTGAAGAACTTTCTGGTTTGGGAGTTAAAGAACTACAAAATCTGGAAAACCAACTAGAGATGAGTTTGAAGGGTGTCCGCATAAAAAAGGATCAACTTTTAACCGATGAGATTAAAGAACTACACCAAAAGGGAAATCTCATTCATGAAGAAAATGTAAAACTCTACAAAAAGATAGATATCATCCACAAAGAAAATGACGAGCTGAAAATGAAGGTTTATGAAGCACAGAACATGAATGAAGAAAATGGGACATCCAATCCATCATACACTATCAGCAATGGATATGACTTACATGCGCCTATCTGTCTCCAGCTAAGCCAACCACAGCCTCGATACAGTGAACAACCAAACAAAACAATGAAACTGGGATTACAGAAGCATAAGCCAAAGCTGTTTGATAATCTGGGATGGTTGTCTGACAACAAGTTGTCAACAACTAGGCCCTAA 783 0.4087 MGRGKIAIRRIENSTSRQVTFSKRRNGLLKKAKELSVLCDAEVGLIVFSSTGKLYDYASTSMKSVIERYKKLKEEHLMLMNPASEVKFWQREAASLRQQLQYLQEYHRQLMGEELSGLGVKELQNLENQLEMSLKGVRIKKDQLLTDEIKELHQKGNLIHEENVKLYKKIDIIHKENDELKMKVYEAQNMNEENGTSNPSYTISNGYDLHAPICLQLSQPQPRYSEQPNKTMKLGLQKHKPKLFDNLGWLSDNKLSTTRP 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2473 260 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere02g2473 260 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Dere02g2473 260 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere02g2473 260 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere02g2473 260 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere02g2473 260 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere02g2473 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 192 - -
Dere02g2473 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere02g2473 260 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere02g2473 260 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere02g2473 260 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Dere02g2473 260 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Dere02g2473 260 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Dere02g2473 260 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2473 Dere-ChrDere02 26857252 26875310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2473 1 236 MADS-box Gene Family AT2G14210 63.713 2.32e-92 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere02g2473 K-box 9.4e-27 No_clan