Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2463 ATGGATACTGAGAATCCACTGTCACTGCGAGAACGGCCATACGAGGAAGGAGAAGAACAATTGTTGCGGGGTCCCATGCAGGTGGACGGGGTCGAAGGTGGATTGAACGCGCAGTATGCGAGTGGAGGTCGTGACGAAGTCAATGGTGAAGTGGAAGAAGCTAGACTGAGTTCTGGGATGCAGTCCCGAACCAGTGAGCTCACCATTGCGTTTGAAGGAGAGGTCTATGTTTTCCCGGCGGTTACACCTGAAAAGGTTCAGGCTGTATTATTACTCTTGGGAGGGTGTGAGATGCCCAATAATGCCTCCAGCTATGATTTTTTGCTGCAACAGTACGGGCAGAAGTTCATGGGAATTAGTGATGCTTCCCGAGGTTCAAAGCTTTCACAGAGAACAGCATCCCTTGTTAGGTTTCGTGAAAAGCGGAAGGAAAGATGCTTTGACAAGAAAATTCGTTACAACTGTCGTAAAGAGGTTGCTCAAAGGATGCATCGTAAGAATGGACAGTTTGCATCATTGAAGGAATGCCACAAATCTTCTGCTGAAAACTGGGAATCAAACAATACTGCTCCTTGTTCAGAACCTACTGAACGGAGATGCCAGCATTGTGGAATCAGTGAGAAGTCTACACCAGCTATGCGCCGAGGACCAGCTGGTCCACGATCTCTGTGCAATGCCTGTGGGCTTATGTGGGCTAATAAGGTAGTTAATATTGGAACCCTAAGAGATCTCAGTAAAGCAGGAAAAATCAATTCTCGTGAACAAAATGAAGTGGATACTTCACCTGATATAAAGCCTTCAAAGACAGATCCAGAAAATTCTTGTCCTGACCAGGGTGAAGCAAGAAGCCCAGAGGAGTCTAAACCTGTACCATTAGATTCCAGTCAATCACCCAGGAGGACAAATGAGCAGTGTATGCTTGAAACTGCTGAAGCCGTCACTGACAACTTATCTATCCTAGTGGAAAATCCTGCTGTTGATCTGCATGAGCAGGATACACTTGAGGATATTGCTGATGCATCTGGTACAGAATTTGAGATTCCTGCAGGTTTTGATGAGCAGATGTGCCATGCAACCCCAAACATCAATTTTGTTGATACACACGGTTTGTTCCTGTTGAAGACAGACAGTGAAGTGCTGGCTCAGAGTCTGGATCTTCTGCATTTAGTAAGGGATCCAGATCCAGATTTGCTGGCTCAGCTAACACTGGACTTCCAGAGATGGTTATGTTTTATGGACAAATTATTTCTGGAATCAGCTTGCATTATGATTGTAGACATACAGTTTTCTTACTTATGGGAGTTTCTGTACATCCCATTTGCCCTGGATGTGATTCATATAATGTGA 1347 0.4506 MDTENPLSLRERPYEEGEEQLLRGPMQVDGVEGGLNAQYASGGRDEVNGEVEEARLSSGMQSRTSELTIAFEGEVYVFPAVTPEKVQAVLLLLGGCEMPNNASSYDFLLQQYGQKFMGISDASRGSKLSQRTASLVRFREKRKERCFDKKIRYNCRKEVAQRMHRKNGQFASLKECHKSSAENWESNNTAPCSEPTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKVVNIGTLRDLSKAGKINSREQNEVDTSPDIKPSKTDPENSCPDQGEARSPEESKPVPLDSSQSPRRTNEQCMLETAEAVTDNLSILVENPAVDLHEQDTLEDIADASGTEFEIPAGFDEQMCHATPNINFVDTHGLFLLKTDSEVLAQSLDLLHLVRDPDPDLLAQLTLDFQRWLCFMDKLFLESACIMIVDIQFSYLWEFLYIPFALDVIHIM 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2463 448 SMART tify_2 60 95 IPR010399 -
Dere02g2463 448 MobiDBLite consensus disorder prediction 250 266 - -
Dere02g2463 448 Pfam CCT motif 131 172 IPR010402 GO:0005515
Dere02g2463 448 Pfam tify domain 62 94 IPR010399 -
Dere02g2463 448 SMART GATA_3 194 251 IPR000679 GO:0006355|GO:0043565
Dere02g2463 448 ProSitePatterns GATA-type zinc finger domain. 200 227 IPR000679 GO:0006355|GO:0043565
Dere02g2463 448 MobiDBLite consensus disorder prediction 250 304 - -
Dere02g2463 448 ProSiteProfiles CCT domain profile. 131 173 IPR010402 GO:0005515
Dere02g2463 448 Pfam GATA zinc finger 200 234 IPR000679 GO:0006355|GO:0043565
Dere02g2463 448 Gene3D - 195 269 IPR013088 GO:0006355|GO:0008270
Dere02g2463 448 PANTHER GATA TRANSCRIPTION FACTOR 28 45 346 IPR045280 GO:0006355
Dere02g2463 448 ProSiteProfiles Tify domain profile. 60 95 IPR010399 -
Dere02g2463 448 MobiDBLite consensus disorder prediction 289 304 - -
Dere02g2463 448 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 238 - -
Dere02g2463 448 CDD ZnF_GATA 199 246 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2463 Dere-ChrDere02 26653088 26660747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2463 66 247 Tify Gene Family AT1G51600 54.497 1.64e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere02g2463 CCT 1.8e-14 CL0281