Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2445 ATGCAAACTTCGGAACCTCAGGCCCATTTTTATGCGGCAGAGCTTGAGCCTCTCCTATATAAAAGCAGATGCTACCCTGAATTGCTCGAATTAGAAGAAATGTCTCACAGGAAATTTGAGCACCCAAGACATGGATCCCTTGGCTTTCTCCCACGGAAGCGTGCAGCTCGTCATCGCGGAAAGGTGAAAGCTTTCCCAAAGGATGATCCCAGCAAACCATGCAGATTGACTGCTTTTGTGGGTTACAAGGCTGGGATGACCCACATTGTCAGAGAAGTTGAGAAACCTGGATCAAAACTTCATAAGAAAGAGACATGTGAGGCTGTTACCATTATTGAAACTCCTCCAATGTTTGTTATTGGTGTCACGGGGTATGTGAAGACACCTCGTGGCCTTCGTACGTTGAATACAGTCTGGGCTCAGCATCTAAGTGAGGAAGTGAAGAGGCGGTTCTACAAGAACTGGTGCAAGTCTAAAAAGAAGGCATTTACCAAGTGTTCAAAGAAATATGAAACCGAGGAAGGAAAGAAGGATATTCAAGTACAACTTGAAAAATTGAAAAAATATGCTTCTGTCATCCGTGTTTTGGCACATACTCAGATAAGGAAGTTGAAGGGTCTGAAGCAAAAGAAGGCACATCTGATGGAGATCCAAGTCAATGGTGGGACAGTAGCACAGAAGGTGGACTATGCATATGGCCTATTTGAGAAGCAAATCCCAGTGGATGCGGTTTTCCAAAAAGATGAGATGATGGATATCATTGGTGTGACCAAGGGTAAAGGTTATGAAGGTGTAGTAACTCGTTGGGGTGTCACTCGTCTTCCACGCAAGACACACAGAGGTCTGAGAAAGGTTGCTTGTATTGGTGCGTGGCACCCTGCTCGGGTTTCTTTCACGGTTGCCAGGGCTGGACAGAATGGTTATCATCACCGTACTGAGTTGAATAAGAAGATTTACAAGGTTGGCAAGGCAGGGCAAGAGTCGCACACAGCCATCACTGAGTATGATAGGACAGAGAAGGACATAACTCCTATGGGTGGATTCCCTCACTACGGTGTGGTAAAGGATGACTATATTATGGTTAGAGGATGCTGTGTGGGACCCAAAAAGCGTGTGATCACCCTTCGTCAGTCACTACTGAAGCAGACATCACGTGTGGCCCTTGAAGAGATCAAGCTTAAGTTCATCGACACTTCCTCCAAGTTTGGTCATGGTCGCTTCCAGAACACTCAGGAGAAGCAGAAGTTTTATGGTCGCTTAAAGGCTTGA 1269 0.4578 MQTSEPQAHFYAAELEPLLYKSRCYPELLELEEMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPMFVIGVTGYVKTPRGLRTLNTVWAQHLSEEVKRRFYKNWCKSKKKAFTKCSKKYETEEGKKDIQVQLEKLKKYASVIRVLAHTQIRKLKGLKQKKAHLMEIQVNGGTVAQKVDYAYGLFEKQIPVDAVFQKDEMMDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVGKAGQESHTAITEYDRTEKDITPMGGFPHYGVVKDDYIMVRGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQNTQEKQKFYGRLKA 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2445 422 Gene3D Translation factors 77 418 - -
Dere02g2445 422 FunFam 60S ribosomal protein L3 259 307 - -
Dere02g2445 422 ProSitePatterns Ribosomal protein L3 signature. 245 268 IPR019926 -
Dere02g2445 422 FunFam Ribosomal protein L3 298 422 - -
Dere02g2445 422 FunFam 60S ribosomal protein L3 116 240 - -
Dere02g2445 422 SUPERFAMILY Translation proteins 37 403 IPR009000 -
Dere02g2445 422 Gene3D - 116 240 - -
Dere02g2445 422 Gene3D Ribosomal protein L3, domain 3 34 307 IPR044892 -
Dere02g2445 422 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 34 417 IPR045077 GO:0003735|GO:0005840|GO:0006412
Dere02g2445 422 FunFam 60S ribosomal protein L3 77 178 - -
Dere02g2445 422 FunFam 60S ribosomal protein L3 34 109 - -
Dere02g2445 422 Pfam Ribosomal protein L3 34 403 IPR000597 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2445 Dere-ChrDere02 26364936 26369300 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2445 34 419 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 86.010 0.0 697